Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3849 ATGCCGATGCAGGAAGAGGAGCGAGTATTGGAGATCAACTTGATCTCCGCACAGGGACTCCAACCACCTTCTTCTCCGCTTCGGAAGCTCCAAACCTACGCTCTCACGTGGATCGATCCCTCAACCAAGCTCCGAACCAGACTCGATAGTCTTGGCGGTCAAAACCCTACTTGGAACGACAAGTTCCTCTTCCGCGTCACGCCGGAGTTTCTCTCCGGCGACACTTCCGCCGTCTCTGTTGCCATTTACGCCGTTGGAACATTCCGCGATCACCTCATCGGCACCGTCACTTTCTTCATCGGGAACGTCCTCTCTGGCGGCGCCGGAGTGCCTTGCTTCAGCGCGTTTCAGATTCGCCGTCCCTCCGGGAGGTTCCACGGCGTCATGAACATCGGAGCCATGGTCGCCGACGTCTCCGATTTTCCGGCGCTGCATAAGATATCGGCGATAGGGTACAGAGACCTGATGGGGATGAAGATGAAGGAGCAGAGGAAGAAAAAGAAGAATAAGAAGGCGCCGGAGGAGGAACTTTCGAGCGATTCTTGCGAGAATTCTTGTGCGGATTCGGTGGAGGAGGCGGATTCATCCTCATCTTCGTCGTCGCTGTCTCCGAGTGCGACGGGGGCTGGGGCGGTGTTGAAGGAGTGGAACGGGGTGAGGGAATTGGCAGGAAACAAAGGACTTGCCGCTTCTGGATTCTTGTGCTGCTTCATGGTTGCCCCCAGAACTGTTCCAGAGCACCATAGTTTTTGCACGAAACCAAGGAGGTTATTGAGGAAAGATGGTAACTCAATGCGAGAGATTGCATCTGAGGACTTGTCTCAAGGTAGTGCCACAGAGGAAAACGTGATGGATTGGGTCAAGCATGACAACCGAAGAATGCTTCATGTTGTATATCGTGTTGGGGACTTGGAAAGGACCATAAAATTTTATACAGAGTGCTTGGGGATGTCGGTTCTCAGAATTCGTGACTTGCCGGAGCTTAGATGTGCTAATGCCTTTCTTGGCTATGGACCTGAAGATGAAAGCTTTGTTATTGAACTGACATACAATTATGGGATTGATGAGTATGACATTGGAAATGGATTTGGCCATTTTGGTGTTTCTTTTGGTGATATTTCAAGCATAGTGGACATTGTAAGAGATAATAAGGATGGAAAAATAATTAGAGAGCCCGGTCCTGTCGAAGGAGGATGCTCCATAATTGCATTCATTGAAGATCCTGATGGTTATAAATTTGAACTTCTAGAAAGGGTTCTCTCTCATGAACCTTTGTGCCGAGTAATGCTTCGAGTGGGTGATCTTAATCGATCCATCGGATTTTATGAGAAGGCTTGTGGTATGCAGCTACTTTATACACGAGATAATCCAGAATGCCAGTATACCATAGCAATCATGGGTTATGGCCCAGAAGATGAAAATGCTGTTCTGGAGTTGACATACAACTACGGAGTCACAGAATATGATAAAGGAGATGGTTATGCCCAGATTGCAATAGGCACAGATGATGTGTACAGAACTGCAGAAGCAATCAAACTTGCTGGTGGAAAGATCACCCGGGAACCTGGACCGGTACCCGGCATCGGAACGAAAATAACTGCATGCTTGGACCCTGATGGTTGGAAAACGGTTTTTGTGGATAATGTCGATTTCCTTAGGGAGTTGGAGTAA 1671 0.4859 MPMQEEERVLEINLISAQGLQPPSSPLRKLQTYALTWIDPSTKLRTRLDSLGGQNPTWNDKFLFRVTPEFLSGDTSAVSVAIYAVGTFRDHLIGTVTFFIGNVLSGGAGVPCFSAFQIRRPSGRFHGVMNIGAMVADVSDFPALHKISAIGYRDLMGMKMKEQRKKKKNKKAPEEELSSDSCENSCADSVEEADSSSSSSSLSPSATGAGAVLKEWNGVRELAGNKGLAASGFLCCFMVAPRTVPEHHSFCTKPRRLLRKDGNSMREIASEDLSQGSATEENVMDWVKHDNRRMLHVVYRVGDLERTIKFYTECLGMSVLRIRDLPELRCANAFLGYGPEDESFVIELTYNYGIDEYDIGNGFGHFGVSFGDISSIVDIVRDNKDGKIIREPGPVEGGCSIIAFIEDPDGYKFELLERVLSHEPLCRVMLRVGDLNRSIGFYEKACGMQLLYTRDNPECQYTIAIMGYGPEDENAVLELTYNYGVTEYDKGDGYAQIAIGTDDVYRTAEAIKLAGGKITREPGPVPGIGTKITACLDPDGWKTVFVDNVDFLRELE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3849 556 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 424 548 IPR037523 -
Amo05g3849 556 PANTHER LACTOYLGLUTATHIONE LYASE 240 556 - -
Amo05g3849 556 Gene3D - 265 418 IPR029068 -
Amo05g3849 556 Gene3D C2 domain 1 124 IPR035892 -
Amo05g3849 556 Pfam C2 domain 10 106 IPR000008 -
Amo05g3849 556 PANTHER LACTOYLGLUTATHIONE LYASE CHLOROPLASTIC-RELATED 240 556 - -
Amo05g3849 556 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 292 418 IPR029068 -
Amo05g3849 556 MobiDBLite consensus disorder prediction 161 205 - -
Amo05g3849 556 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 293 418 IPR037523 -
Amo05g3849 556 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 428 542 IPR004360 -
Amo05g3849 556 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 294 415 IPR004360 -
Amo05g3849 556 Gene3D - 421 556 IPR029068 -
Amo05g3849 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 135 IPR035892 -
Amo05g3849 556 MobiDBLite consensus disorder prediction 179 205 - -
Amo05g3849 556 TIGRFAM glyox_I: lactoylglutathione lyase 281 426 IPR004361 GO:0004462|GO:0046872
Amo05g3849 556 TIGRFAM glyox_I: lactoylglutathione lyase 425 548 IPR004361 GO:0004462|GO:0046872
Amo05g3849 556 ProSitePatterns Glyoxalase I signature 2. 360 372 IPR018146 GO:0004462|GO:0046872
Amo05g3849 556 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 425 548 IPR029068 -
Amo05g3849 556 ProSitePatterns Glyoxalase I signature 1. 296 317 IPR018146 GO:0004462|GO:0046872
Amo05g3849 556 SMART C2_3c 9 112 IPR000008 -
Amo05g3849 556 CDD C2_SRC2_like 10 131 IPR044750 GO:0006952
Amo05g3849 556 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3849 Amo-Chr5 104778303 104781865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3849 425 545 Calmodulin-binding Proteins AT1G08110 25.850 3.22e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3849 K01759 - gmx:100775714 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0903 03 18832387 18835566 Amo05g3849 05 104778303 104781865 PCT
Amo05g3849 05 104778303 104781865 Amo03g0903 03 18832387 18835566 PCT