Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3844 ATGAAGAATATTAATAATAATGATAATAATAAACATGGTTCTATTATTACCCTCTTATTATTAGTTCTAATTTCAATGTTAATCCAGCATGTTAGAGCAACAAATGCTTCTTCTTCATCATCAGGAGATGCTGTGTCCAATTTCCAACCAAGCCTTGTTGTTGTGATAGGAATCCTTGGCCTAATGTTTTCACTAACATTTGTTCTTCTTGTTTTTGCCAAATTTTGCCAAAGAGGAGCACTTGTCCCTCTTCTCCAAACAGAGAATCAAGAAAACCAATTGTTATCAAGGTCTAGAAGATTCTCAGGAATTGATAAGAATGTTATTGAGTCATTACCCTTCTTCAGATTCTCATCCCTAAAAGGATCAAAGGAAGGTTTGGAGTGTTCTGTTTGCTTATCGAAATTCGAAGATGTCGAAATCCTTAGGCTCTTGCCAAAATGTAAGCATGCTTTTCACATTGATTGCATTGATCACTGGCTTGAGAAACACGCAAGCTGCCCTCTTTGCAGGCACAAGGTGAATCCGGCCGACGAGTCGATTTTCGCCTATTCAAACAGCTTAAGGAGGCTTGTTAACAATAATTCGGCCGCAGCCGAAGACTCCAACATGGAGCTCTTCGTCCAAAGAGAGGAGGAAGAAGAAGGAGGAGAAGCAGAGCGACGCGGCTCAACAAGATTTAGTATTGGAAGTATTAGTCTCCGGAGATTATTTTCGAAGGATGTTAAGGAAGAAGAGTTGCCTATACAGAACAGAACCGATTGCAAAAACAAGGAGTACCATAAACACAAACACCGGATTACTGTCTCCGATGTTGTGTTTAAGAATCGGTGGAGCAATGTTAGTTCTTCAGACATAATGTTCTTGAACTCCGAGATGCTTAACGAGGTTTCGAGTTGCCGGTTCGACAACCAGAATGCAAATGATCAAGGAATCTTGAACCTTAAGGAAGAGATGGAGAGGAAAATTTCATTTGAGAGCAAAATTGGTGCAATAAACAAGATTAGTAACTCAAATTCAGATAAGGCTCCTTCTTCTTCTTCTTCTTCTACTTCTATAAAGCATTTGATGAATGAACATAGTGAGAAAAGGTCAATGTCAGAAATCATAGGAGTTTCAAGATTTGGTGAAATAGGAATGATGATGAAACAACAAAACAGTGCATTTAATAAGGATTCTTCTTCTTTGATTGATGAGAACAATAACATGAAAGAAGAAAGGATGAGGCAGCTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAACAAGGTCTCATCATAAGAATAATCAAAAGACATTAGATGTATAG 1326 0.3801 MKNINNNDNNKHGSIITLLLLVLISMLIQHVRATNASSSSSGDAVSNFQPSLVVVIGILGLMFSLTFVLLVFAKFCQRGALVPLLQTENQENQLLSRSRRFSGIDKNVIESLPFFRFSSLKGSKEGLECSVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHASCPLCRHKVNPADESIFAYSNSLRRLVNNNSAAAEDSNMELFVQREEEEEGGEAERRGSTRFSIGSISLRRLFSKDVKEEELPIQNRTDCKNKEYHKHKHRITVSDVVFKNRWSNVSSSDIMFLNSEMLNEVSSCRFDNQNANDQGILNLKEEMERKISFESKIGAINKISNSNSDKAPSSSSSSTSIKHLMNEHSEKRSMSEIIGVSRFGEIGMMMKQQNSAFNKDSSSLIDENNNMKEERMRQLWFPIARRTVQWFVNRETRSHHKNNQKTLDV* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3844 441 SMART ring_2 129 170 IPR001841 -
Amo05g3844 441 CDD RING-H2_PA-TM-RING 128 171 - -
Amo05g3844 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 180 IPR013083 -
Amo05g3844 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 436 - -
Amo05g3844 441 SUPERFAMILY RING/U-box 108 177 - -
Amo05g3844 441 Pfam Ring finger domain 128 171 IPR001841 -
Amo05g3844 441 MobiDBLite consensus disorder prediction 335 355 - -
Amo05g3844 441 MobiDBLite consensus disorder prediction 335 364 - -
Amo05g3844 441 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Amo05g3844 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3844 Amo-Chr5 104744972 104746466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3844 19 441 C3H Transcription Factor Family AT4G28890 46.833 2.69e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3844 K10664 - gmx:100803207 472.241