Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3832 ATGGGAGTAGAGCCACGAACACCAAGCTCTGAAATGGAAACAGAAACAGTAGAAACTGGAAGAAGCACTGCCACATGTGCTTCACCACCATCAACACCAACTCTCACATCGAGCAAGAAGCGATCAAGGCAAAGCAATAAAAATGACAATGACAGGAATGACACCACTAACACCAAGCACCCTGTATACAGAGGGGTCAGAATGCGCACGTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCACGCAAAAAGAGCCGCATCTGGCTCGGAACCTTCGCCACCGCCGACATGGCAGCGCGTGCACACGACGCCGCCGCTCTCACCATCAAAGGCTCCTCCGCCATCCTCAACTTCCCCGAACTCGCACCCTCTCTCCCCCGCCCCGCCTCCAACTCCCCCCGCGACGTCCAGGCAGCCGCCGCCAAAGCCGCCGCAATGATTCCCCCTCCTCCTACTCCTACTCCTACTCCTCCTCCACCGCCGGAGGATGAATCCTCTTCCTCTTCCACCACCACCACCACTACCACCTCCGAGGATGAGGAGCTTGGCGAAATCGTTGAGCTTCCTCCGCTTGGAAACAGCTTCGAAGTAGCTGAAGTAGATCCGAGTGGGATCAACGATCTTGATCAGTTGGTGTTCTTCGATCCGTTTGACGGTAACTGTTACCCTTGGAATCAGGGAAGCATTTATGATGATCAYGATCATGATTGTTATGGCTGCTTCATTAATCATAACAATAATAATAACAGCAGCRACATCATGATGTCAATGCTGCTCGAGTCAGATTCTGTTCTTCCTTCTTCTCCTTCTAATCTTTCTATTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTTCAATGTTCTCTCTGGCAACACTAA 876 0.5114 MGVEPRTPSSEMETETVETGRSTATCASPPSTPTLTSSKKRSRQSNKNDNDRNDTTNTKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATADMAARAHDAAALTIKGSSAILNFPELAPSLPRPASNSPRDVQAAAAKAAAMIPPPPTPTPTPPPPPEDESSSSSTTTTTTTSEDEELGEIVELPPLGNSFEVAEVDPSGINDLDQLVFFDPFDGNCYPWNQGSIYDDHDHDCYGCFINHNNNNNSSXIMMSMLLESDSVLPSSPSNLSISSSSSFSSSLQCSLWQH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3832 291 MobiDBLite consensus disorder prediction 165 179 - -
Amo05g3832 291 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 25 247 - -
Amo05g3832 291 MobiDBLite consensus disorder prediction 9 41 - -
Amo05g3832 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 247 - -
Amo05g3832 291 MobiDBLite consensus disorder prediction 146 164 - -
Amo05g3832 291 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Amo05g3832 291 MobiDBLite consensus disorder prediction 42 58 - -
Amo05g3832 291 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Amo05g3832 291 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Amo05g3832 291 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Amo05g3832 291 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Amo05g3832 291 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Amo05g3832 291 MobiDBLite consensus disorder prediction 1 64 - -
Amo05g3832 291 MobiDBLite consensus disorder prediction 120 187 - -
Amo05g3832 291 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Amo05g3832 291 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3832 Amo-Chr5 104571565 104572811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3832 36 251 AP2-EREBP Transcription Factor Family AT5G11590 51.131 2.11e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g3832 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3832 K09286 - aip:107641289 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0897 03 18737471 18738866 Amo05g3832 05 104571565 104572811 PCT
Amo05g3832 05 104571565 104572811 Amo03g0897 03 18737471 18738866 PCT