Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3806 ATGGATCTTGGGGCAGTGGGTTTGGATGGGTTGGTGGGTGGTTCTATTGGGTGTTCAGATGGTGAGACAAAGCACAAGTGGTACGGATCTGGGTTGTTGAAGCAGGAGAGATCTGGCGGTGGCAACACAAACAACGAAGATGATGATGAATATTGGAGGAGCAACAAAGTGGCTAAGACTAGTATGAATGGCGAGAGGAACTCGTCATCAAGCTTGCTGAGATCCAATGCAACTCTCTTCTCTGATGTTAGTGGCAACCAGCAGCAGCAACAAATGCTAAGTTTCTCTTCACCATATCATTACCTTCCCTTATCAAGAAATACAGGTTGTCACAGTTGGGGAAGCAATAGCATGCATGGGAATGGGAATGGGATTGGGATGAGAGGGGCATTCACTCCATCACAGTGGATGGAGCTAGAACAGCAGGCCCTGATCTACAAGTATATAACCGCTAATGTCCCTGTCCCATCTCATCTTCTTATTCCCATCAAGAAAGCCCTTCATTCTGCTGGCTTCTCTCACTTCTTCAGGCCCAGTGCAGTGGGCTGGGCTGGGTTCCATCTGGGCTTCTCTAACAGCACCGATCCCGAGCCAGGCAGGTGCCGGAGAACAGATGGCAAGAAATGGCGTTGCTCCCGAGATGCCGTTGTCGACCAGAAGTATTGTGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCACAATGGCCATGCCCTCACCGGGACAACCACCTCCTCCACCACCAAGAATGTGGTGCCCGGAAACACTCCTCCTCCTCCTCCTTCCAACACCCTCACCTATTCTTCACCTCCTAATACCATCAGCAGGATGTTTATGACTACTACTACTACTAATAATAATAAGGAGAGTAATGGTAGTGAGAGAATCCCAGAAGCTGAAGATTCACTTCCAATGCTGCCACCAACTCTTGAGCTGAAACCAAAGGAAAACCCTTTCATCATTCCCAAACACCAAATCCCATACCAACAGGAATCTTCAAGGAATAATGAGTTTGGTCTTGTCACTTCTGATTCCTTACTGAACCCTTCCCAGAAGACCACCACAACAACCTTAACAGACAGGGAAACTGATTCCCATCATTCCCTCAGGCATTTCATTGACGACTGGCCCAAATCCCAGACCCACCGCTCTGCCTTGTCGTCGTGGCCGGAGTCCGAGAGGACCGAGCTCTCGATTTCCATCCCCATGACAACAACCTCCAATGACTTCATGTCGTCCACCTCCTCTCCCACCAATGACAAGCTCACTCTGTCACCCCTGCGTCTATCAAGGGAGCTAGACCCGATTCAAATGGGTTTGGGAGTGGGAAACAATGCTTTAAGTGATTCATCAAACTCATCAAGGCAAGCTAACTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAAGTTCTGAATCTCAGCACTAACAACAACAATGGAAGTGATAATCAATGTGGCAAGAACAACAATTCGTCCTCAGCACTTAACCTCATGAGTGATGGGTGGGATAATACTAATAGCCCTCCATTAGGGTCTTCTCCKACTGGGGTTCTMCAGAAGACAGCCTTTGGATCTTTATCAAATAGCAGTGCTGGGAGCAGCCCAAGGGCAGAGAATAAAACACAAGAAGGTTCAAGCTTGTGCAATGATCTTCTAATGCCTGCATTGTAA 1704 0.4836 MDLGAVGLDGLVGGSIGCSDGETKHKWYGSGLLKQERSGGGNTNNEDDDEYWRSNKVAKTSMNGERNSSSSLLRSNATLFSDVSGNQQQQQMLSFSSPYHYLPLSRNTGCHSWGSNSMHGNGNGIGMRGAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKKALHSAGFSHFFRPSAVGWAGFHLGFSNSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGHNGHALTGTTTSSTTKNVVPGNTPPPPPSNTLTYSSPPNTISRMFMTTTTTNNNKESNGSERIPEAEDSLPMLPPTLELKPKENPFIIPKHQIPYQQESSRNNEFGLVTSDSLLNPSQKTTTTTLTDRETDSHHSLRHFIDDWPKSQTHRSALSSWPESERTELSISIPMTTTSNDFMSSTSSPTNDKLTLSPLRLSRELDPIQMGLGVGNNALSDSSNSSRQANWIPITWESSMGGPLGEVLNLSTNNNNGSDNQCGKNNNSSSALNLMSDGWDNTNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENKTQEGSSLCNDLLMPAL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3806 567 MobiDBLite consensus disorder prediction 347 364 - -
Amo05g3806 567 MobiDBLite consensus disorder prediction 243 258 - -
Amo05g3806 567 PANTHER - 20 554 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo05g3806 567 PANTHER GROWTH-REGULATING FACTOR 9 20 554 - -
Amo05g3806 567 MobiDBLite consensus disorder prediction 347 371 - -
Amo05g3806 567 MobiDBLite consensus disorder prediction 32 51 - -
Amo05g3806 567 ProSiteProfiles QLQ domain profile. 130 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo05g3806 567 MobiDBLite consensus disorder prediction 481 559 - -
Amo05g3806 567 Pfam WRC 196 238 IPR014977 -
Amo05g3806 567 MobiDBLite consensus disorder prediction 481 567 - -
Amo05g3806 567 MobiDBLite consensus disorder prediction 289 308 - -
Amo05g3806 567 Pfam QLQ 130 163 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo05g3806 567 ProSiteProfiles WRC domain profile. 195 239 IPR014977 -
Amo05g3806 567 MobiDBLite consensus disorder prediction 227 277 - -
Amo05g3806 567 SMART QLQ_2 129 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3806 Amo-Chr5 103976585 103979310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3806 1 535 GRF Transcription Factor Family AT2G22840 41.166 3.03e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo05g3806 WRC 5.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3806 - - aprc:113865097 632.869