Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3787 ATGACTTTCAAGCGCAGAAATGGCGGAAGAAACAAGCATGGCCGCGGCCACGTCAAATTCATCCGCTGTTCCAACTGCGGCAAGTGCTGCCCTAAGGACAAATCGATCAAGCGGTTCCTTGTGAGGAACATTGTTGAGCAAGCTGCAGTTCGTGATGTTCAGGAAGCCTGCGTCTATGAGCAATACACTCTTCCGAAGTTGTACGTGAAGATGCAGTATTGTGTTTCCTGTGCCATCCACTCTCATGTCGTGAGGGTGCGTTCTCGCACCGATAGGAGGAACCGCGAGCCGCCACAGCGCTTTGCCAGGCGTAGGGATGATGCACCAAGGCCCGGTCAGCCTGGTCAAGCACCCCGTCCTGCTGGTGGAGTAGGAGCTGCCCCTAGAGCTTAA 393 0.5496 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFARRRDDAPRPGQPGQAPRPAGGVGAAPRA* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3787 130 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Amo05g3787 130 MobiDBLite consensus disorder prediction 85 130 - -
Amo05g3787 130 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Amo05g3787 130 PANTHER 40S RIBOSOMAL PROTEIN S26 1 127 IPR000892 GO:0003735|GO:0005840|GO:0006412
Amo05g3787 130 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Amo05g3787 130 PANTHER 40S RIBOSOMAL PROTEIN S26 1 127 - -
Amo05g3787 130 MobiDBLite consensus disorder prediction 89 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3787 Amo-Chr5 103715671 103717178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3787 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G56340 84.483 7.67e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3787 K02976 - gmx:100305706 196.823