Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3780 ATGGGTTCACCCCCAAAGAATAAGGGAGAGAGGAAAATAGAGAGAGGTTCCATAGCTATAATCTTGAGATATGCAGATTGTGTTGATGTTTTGCTTATGTTAATGGGTGCTGTTGGAGCAGTTGGAGATGGCATGTCCACAAACATTCTTCTCATCTTCGCTAGCCGCATCATGAACAGCTTAGGATATGGCAACCAACAAAGTAGTGGCACTGCCAACAATTACATGTCCCAGGTTGAAAAGTGCAGCTTGTATTTTGTGTACTTGGGACTAGCAGTGATGGTGTTGGCCTTCATGGAAGGGTACTGTTGGAGTAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGGTACAAATATTTGGAAGCTGTTCTAAGACAAGAAGTGGGGTTTTTTGAATCACAAGAAGCAACTACTTCTGAAATCATCAATTCCATATCAAAGGACACTTCTCTCCTCCAAGAAGTCCTAAGTGAAAAGGTGCCACTATTCTTAATGCACTCATCATCATTCATCTCTGGGATCGCTTTTGCCACCTACTTCTCATGGAGGCTGGCCTTAGTAGCATTCCCAACACTTGTTCTTCTCATAATCCCTGGCATGATCTATGGCAAATACCTAATCTATTTGTCAAAGTCATCTGCCAAGGAGTACGGGAAGGCGAACGCCATCGTCGAGCAGGCATTAAGCTCCATCAAAACCATTTATTCGTTCACGGCGGAGAGGAGAATCCTTGTGAGGTATTCAGAGATCTTAGAGAGAACCTCAAGGCTTGGAATCAAGCAAGGGATAGCAAAGGGTTTAGCTGTTGGAAGCACAGGTTTATGCTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGCTGAAAGTGGTGGAAGGATCTATGCAGCTGGAATTTGCTTCATTATGAGTGGACAATCCCTTGGAGTGGTACTTCCAGATTTGAAGTACTTGACAGAAGCATCAGTAGCATCCAAAAGAATTTTCAACATGATTGACAGAAAAGCAGTAATTGATGGTGAAGACACAACAAAGGGAATAGTGCTAGACCAAATTAACGGGAACCTAGACTTCGAACATGTGAAATTCACATACCGTTCAAGACCAGACAACCTCGTACTCAATGACTTCAATCTGAGGGTTGAATCAGGCAAAACGGTTGCACTTGTTGGTGCAAGTGGGAGTGGAAAGTCAACGGCAATAGCGTTGGTGCAAAGGTTCTATGATGTGGATGAAGGTGTTGTGAGGGTTGATGGTGTTGACATAAAGAGGTTGCAGTTGAAGTGGTTGAGGGGTAAAATGGGGCTTGTGAGTCAAGAACATGCATTGTTTGGGACATCTATTAAGGAGAATATTATGTTTGGAAAGCTTGATGCTACCATGGATGAGGTTGTTGCTGCTGCTACTGCTGCTAATGCTCATAACTTTGTTAGGCAGCTCCCTCAGGGTTATGAAACCAAGATTGGAGAAAGGGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCAATTGCAAGAGCCATCATAAAGAATCCAGTGATTCTTCTTCTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCTGAATTACTTGTCCAAAATGCCCTTGATCATGCCTCATTGGGCAGGACTACATTGGTTGTTGCACACAAGCTATCAACTGTCCGAAATGCAGATGTCATAGCCGTTGTCAACGCCGGTTCCATCATCGAAATCGGCACGCACAACGAGCTCATAACCCATCCAAACGGCCAATATGCAAAGCTAGCAAAACTCCAAACACAACTCAGCTTTGATGATCAACAAGAAATATCCAATGCTCTTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGAACCAGCACAGCAAGATCAACAAGCCCTGCAATTTTCCAAAAATCACCAATCCCTATTGATGATAACACCATAAACCCGGAATCATCTCTTGTTTCTCACCCTTCACCTTCTTTTCCAAGGCTTCTATCTCTGAATGCACCTGAATGGAAACAATGTTTAATTGGTACTTTTTCCGCAATAGCTTTCGGCTCAGTGCAGCCCATATATGCCTTAACAATTGGTGGCATGATTTCTGCATTTTTCGCCGAAAGCCATAGTGAAATGATTCACAGAATCAGGACTTACTCTTTGATTTTCACTTCTCTTTCTCTTGCTTCCATCACACTCAACCTCTTGCAGCACTACAATTTCGCATACATGGGAGCAAGATTAACAAAAAGGATACGGCAGAGAATGCTTGAGAATATCTTAACATTCGAAACGGCTTGGTTTGATGAAGAAAATAATTCCAGTGGAGCATTGTGCTCGAGGCTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTCGCGGATCGCGTTTCATTGCTGGTTCAAACAGCTTCTGCTGTCAGCATTGCAATGATCATAGGACTCGCCGTGGCGTGGAAGCTCGCTCTTGTGATGATAGCAGTGCAGCCACTCACAATCCTCTGCTTCTACACAAGAAAAGTTCTTCTCTCTACACTCTCATCAAAATTCATCAAGGCACAGAATCATAGCACACAGATTGCAGTTGAAGCAGTGTACAACCACAGAATTGTGACTTCATTTGGAAGCATACAAAAGGTTTTGACATTATTCGATGAAGCGCAGGAGGCGCCAAGGAAGGAGGCGAGGAAGAAGTCGTGGCTGGCCGGGATTGGAATGGGGTCTGCTCAATGCCTAACATTCATGACATGGGCTTTGGATTTCTGGTATGGAGGGACATTGGTGGAGAAGAAGGATATTTCTGCAGGGGATGTGTTTAAGACATTCTTTGTTTTGGTTAGCACTGGGAAGGTCATTGCTGAAGCTGGAAGCATGACTTCTGATCTTGCAAAGTCCTCAACTGCTGTCAAATCTGTTTTTGACATTCTTGACAGGAAATCACTTATTCCCAAGGCTGGTGATTGCAACAATGGAAGAAAGTTGGAAAATATGAGTGGGAAGATAGAATTAAAGAACGTTGATTTCGCCTACCCAAGTAGGGCAGGGACACCGATATTGCGCAAGTTTTGCTTGGAGGTGAAGGCAGGGAAGAGTATTGGGTTAGTTGGAAAGAGTGGTTGTGGAAAATCAACAGTGATTGCATTGATCCAAAGATTCTATGATGTTGAGAGAGGGTTTGTGAAAATGGACAATGTGGACATAAGGGAACTAGATATTCAATGGTATAGGCAGCACACTGCACTTGTTAGCCAAGAACCTGTCATATATTCTGGCACTGTAAGGGATAACATCTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTTGTTGAGGCTGCAAAAGCCGCAAATGCTCATGAGTTCATATCATCATTGAAAGATGGATATGAAACAGAATGTGGAGAAAGGGGAGTGCAACTATCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATAAGGAACCCAACAATATTGCTGCTTGACGAAGCAACAAGTGCACTTGATGTTCAATCAGAACAAGTTGTGCAAGAAGCATTAGACAGGATCATGGTGGGAAGAACCACCATTGTTGTAGCACATAGGCTCAACACCATCAAAGAACTTGACTCGATTGCATATGTCTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAATCTTGCATGCCATCAAATCCAAAATTAG 3729 0.4342 MGSPPKNKGERKIERGSIAIILRYADCVDVLLMLMGAVGAVGDGMSTNILLIFASRIMNSLGYGNQQSSGTANNYMSQVEKCSLYFVYLGLAVMVLAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFESQEATTSEIINSISKDTSLLQEVLSEKVPLFLMHSSSFISGIAFATYFSWRLALVAFPTLVLLIIPGMIYGKYLIYLSKSSAKEYGKANAIVEQALSSIKTIYSFTAERRILVRYSEILERTSRLGIKQGIAKGLAVGSTGLCFAIWAFLAWYGSHLVMYKAESGGRIYAAGICFIMSGQSLGVVLPDLKYLTEASVASKRIFNMIDRKAVIDGEDTTKGIVLDQINGNLDFEHVKFTYRSRPDNLVLNDFNLRVESGKTVALVGASGSGKSTAIALVQRFYDVDEGVVRVDGVDIKRLQLKWLRGKMGLVSQEHALFGTSIKENIMFGKLDATMDEVVAAATAANAHNFVRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDHASLGRTTLVVAHKLSTVRNADVIAVVNAGSIIEIGTHNELITHPNGQYAKLAKLQTQLSFDDQQEISNALSSAARSSAGRTSTARSTSPAIFQKSPIPIDDNTINPESSLVSHPSPSFPRLLSLNAPEWKQCLIGTFSAIAFGSVQPIYALTIGGMISAFFAESHSEMIHRIRTYSLIFTSLSLASITLNLLQHYNFAYMGARLTKRIRQRMLENILTFETAWFDEENNSSGALCSRLSNEASMVKSLVADRVSLLVQTASAVSIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSSKFIKAQNHSTQIAVEAVYNHRIVTSFGSIQKVLTLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKKDISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVKSVFDILDRKSLIPKAGDCNNGRKLENMSGKIELKNVDFAYPSRAGTPILRKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGFVKMDNVDIRELDIQWYRQHTALVSQEPVIYSGTVRDNILFGKQDATENEVVEAAKAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACHQIQN* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3780 1242 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Amo05g3780 1242 Gene3D ABC transporter type 1, transmembrane domain 84 915 IPR036640 GO:0005524|GO:0016021
Amo05g3780 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Amo05g3780 1242 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Amo05g3780 1242 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 19 1239 - -
Amo05g3780 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 334 - -
Amo05g3780 1242 SUPERFAMILY ABC transporter transmembrane region 661 979 IPR036640 GO:0005524|GO:0016021
Amo05g3780 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 600 IPR027417 -
Amo05g3780 1242 Pfam ABC transporter transmembrane region 678 948 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g3780 1242 Pfam ABC transporter transmembrane region 38 296 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g3780 1242 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524
Amo05g3780 1242 Gene3D - 992 1242 IPR027417 -
Amo05g3780 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Amo05g3780 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1239 IPR027417 -
Amo05g3780 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 19 1239 IPR039421 -
Amo05g3780 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g3780 1242 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Amo05g3780 1242 SUPERFAMILY ABC transporter transmembrane region 21 341 IPR036640 GO:0005524|GO:0016021
Amo05g3780 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g3780 1242 Gene3D - 360 622 IPR027417 -
Amo05g3780 1242 CDD ABC_MTABC3_MDL1_MDL2 1002 1236 - -
Amo05g3780 1242 SMART AAA_5 389 615 IPR003593 -
Amo05g3780 1242 SMART AAA_5 1029 1221 IPR003593 -
Amo05g3780 1242 Pfam ABC transporter 1023 1169 IPR003439 GO:0005524
Amo05g3780 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3780 Amo-Chr5 103557567 103565638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3780 34 620 Calmodulin-binding Proteins AT2G36910 34.746 1.91e-102 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3780 K05658 - gmx:100801088 2013.81