Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3762 ATGCAAATTCTCTATCTTCTCTCTTTCTTCCTCTTCTTCCTCACATATGCAGCATCTCAGTCTTTGTATGAACAAGAACATGCAGTGTTGTTAAAGATAAAGCAATACTTTCAAAATCCACCAATCCTCAGTGACTGGACCTCAAACACTTCACACTGCCAATGGCCAGAGATAACTTGCACCAATGGTTCTGTCACTTCACTATCCATGTTCAACTTCAACATAACTCAAACACTTCCACCTTTCATGTGTTCACTAAAAAGCCTCAAACACATTGATTTTCAGTTTAACTATATCCCTGGTGAGTTCCCAAGGTTCCTCTATGGATGCTCCAATCTTGAGTACCTTGATCTCTCAGAGAACTACCTTGTTGGTGAGATTCCTCATGACATAGACAGGTTGCCAAGGTTGAAGTTTCTTAACCTTGGGGCCAACAATTTCTCTGGGGACATTCCAAGTAGCATTGGGAATCTCAAAGAACTGAGGAATCTTCAACTTCATATGTGTCTCTTCAATGGTACTTTCCCTGATGAAATTGGCAACTTGTCAAACCTTGAAACCTTGTATATGTACACAAACATCATGCTTCCTCAAACAAAGTTGCCATCAAGCTTGACCAAGTTGAAGAATCTGAAAGTCTTTAGGATGAATGATGCCAACTTGGTTGGTGAAATCCCTGAATCCATTGGAGAAATGGTGAATTTGGTGGAGTTGGATTTAGCACAAAACAATCTGAGAGGAGAAATTCCAAGTGATTTGTTCAAGCTGAAGAATCTGAGCTTCCTTTATCTTTTCAAAAACCAGCTTTCTGGAGTTATACCTGGAGTTGTTGAAGCATTCAACTTGACAATGTTGGAAATTTCAGAGAACAATCTCAGTGGGACAATACCGAATGATTTCGGAAAGCTCAAAAGTTTGACTCAGTTGTGCTTGCAAATGAATCAATTATCTGGTGATGTACCAGAAAGCATTGGTACTTTGCCATCTTTGACAGATTTCATCGTTTTCCAAAACAACTTATCAGGTAATCTTCCTAAAGACTTCGGCCGCTTCTCAAATCTTGAAACTTTCCAGGTTGCATCTAATAGTTTTACAGGAAGGCTTCCAGAGAATTTGTGCTATAATGGAATGTTAGTTGGTTTAACTGCTTATGACAATAACCTGAGTGGTGAGTTGCCAGAATCTCTAGGAAATTGCAATACCCTGCAATATCTGAGAGTTGACAAGAACAACCTTTCTGGCAACATTCCTAGTGGCCTGTGGACTTCCAGGAACTTGTCGACGTTTATGATAAACGAAAACAAGTTCACTGGTCAGCTTCCTGAAAGATTTCCTAACAATCTTTCAACATTGGCCTTAAGTTATAATAAGTTTTTTGGAATAATCCCAGATAGAGTGTCTTCATTGAAGAATTTAGTTGTGTTCAATGCAAGTAACAACTTCTTCAATGGAAGTATTCCAAAGGGGCTAACAGAGCTTCCACAAATAACAACTCTTTTGCTCGATCGGAACCAGCTCACAGGGCCACTTCCATCAGATATAGTTTCATGGAAGTACCTAGTAACTCTGAATTTGAGCCATAATAAAATCTCTGGAGAAATTCCAGATGCAATTGGCAAGTTACCTACATTAAATGTGTTGGACTTGTCAGAAAACAAGATCTCCGGGCAAATTCCACCACAAATTGCACAGATGAGGCCTACCAATCTCAATTTGTCCTCAAATCTTTTGACAGGGAGGGTTCCAAGTGAGCTTGAAAACATTGCTTATGCTACAAGCTTCTTGAACAATCCTGGTTTATGTGCTGATACTTCAGTGCTAGACCTTTCCTTGTGCAGGTCTAGCACTCGAAAAACAAAGACTAGTTCACCTTTATCTCATGCTATGCTTGTGAAACTGCTGGTAGCAGCCTCCTTACTAGCTTTCTTGTCAGTACTCTTGTTGATTGTATTTTATAGAAAAAGGCAGCGAGAATTGCGAAAGTCATGGAAACTCACTTCCTTTCAGAGACTGAGCTTCACGAAATCAAACATTGTGTCTTCAATGACAGAAGAAAATATTGTAGGCCGGGGTGGATATGGTGCAGTATACCGTGTTGCCATCGAAGGTTTAGGCCATGTTGCTGTGAAAAAGATAAGGAACAGCAGGAAATTAGAGCCGAAACTCGAGAGTTCATTCCTTGCAGAGGTTGAAATACTGAGCAATATTAGGCATACCAATATTGTCAAGTTGCTATGCTGCATCTCAAGTGAGGATTCTCTGCTCCTTGTCTATGAGTATCTTGAGAATCACAGCCTTGACAGATGGCTGCACAAGAAGAGTAAGTCATCATCAGGACATTATGATATCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCTCAAGGTTTGTGCTACATGCACCATGACTGCTTGCCCCCGGTTGTTCATCGAGATGTGAAGTCAAGTAACATTCTGTTGGATTCTGATTTCAATGCAAAAGTTGCTGATTTTGGTCTGGCAAAGATGTTGGTCGAACCGGAAGATGTTGCTACCATGTCCTCAGCCGTAGCCGGCACATTCGGCTACATTGCTCCAGAGTATGGTCAAACAACAAGAGTCAATGAGAAGATAGATGTCTATAGTTTTGGAGTTATCCTTTTGGAACTAACAACCGGAAGAGAAGCAAATCAAGGAGAAGATGAGTACTTGTCTCTGGCCGGATGGGCGTCACAGCTTGTCGCTTTAGGAAGTAACATAGAAGATGTTCTGGATGAAGATGTTAAAGAACCAAGTAACTTGGAAGAAATGTGCAGCATCTTCGAACTCGGGGTCAAGTGCACTGCACCAGTGCCAACTAGTAGACCTTCCATGAAGGAGGTTCTAAAAACATTGCAAAGCTTCAGTAGTCCATTTGCCAAAGTAGAGAAGAATGTTGGTTACTATGATGCTGCTCCCCTTCTTAAGCATGAAAAATGGGAAAAGCAGATATATTGA 2985 0.4077 MQILYLLSFFLFFLTYAASQSLYEQEHAVLLKIKQYFQNPPILSDWTSNTSHCQWPEITCTNGSVTSLSMFNFNITQTLPPFMCSLKSLKHIDFQFNYIPGEFPRFLYGCSNLEYLDLSENYLVGEIPHDIDRLPRLKFLNLGANNFSGDIPSSIGNLKELRNLQLHMCLFNGTFPDEIGNLSNLETLYMYTNIMLPQTKLPSSLTKLKNLKVFRMNDANLVGEIPESIGEMVNLVELDLAQNNLRGEIPSDLFKLKNLSFLYLFKNQLSGVIPGVVEAFNLTMLEISENNLSGTIPNDFGKLKSLTQLCLQMNQLSGDVPESIGTLPSLTDFIVFQNNLSGNLPKDFGRFSNLETFQVASNSFTGRLPENLCYNGMLVGLTAYDNNLSGELPESLGNCNTLQYLRVDKNNLSGNIPSGLWTSRNLSTFMINENKFTGQLPERFPNNLSTLALSYNKFFGIIPDRVSSLKNLVVFNASNNFFNGSIPKGLTELPQITTLLLDRNQLTGPLPSDIVSWKYLVTLNLSHNKISGEIPDAIGKLPTLNVLDLSENKISGQIPPQIAQMRPTNLNLSSNLLTGRVPSELENIAYATSFLNNPGLCADTSVLDLSLCRSSTRKTKTSSPLSHAMLVKLLVAASLLAFLSVLLLIVFYRKRQRELRKSWKLTSFQRLSFTKSNIVSSMTEENIVGRGGYGAVYRVAIEGLGHVAVKKIRNSRKLEPKLESSFLAEVEILSNIRHTNIVKLLCCISSEDSLLLVYEYLENHSLDRWLHKKSKSSSGHYDILDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKSSNILLDSDFNAKVADFGLAKMLVEPEDVATMSSAVAGTFGYIAPEYGQTTRVNEKIDVYSFGVILLELTTGREANQGEDEYLSLAGWASQLVALGSNIEDVLDEDVKEPSNLEEMCSIFELGVKCTAPVPTSRPSMKEVLKTLQSFSSPFAKVEKNVGYYDAAPLLKHEKWEKQIY* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3762 994 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Amo05g3762 994 CDD STKc_IRAK 688 962 - -
Amo05g3762 994 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Amo05g3762 994 Pfam Protein kinase domain 684 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3762 994 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 988 - -
Amo05g3762 994 Gene3D Transferase(Phosphotransferase) domain 1 761 977 - -
Amo05g3762 994 Gene3D Phosphorylase Kinase; domain 1 664 760 - -
Amo05g3762 994 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 988 - -
Amo05g3762 994 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Amo05g3762 994 SUPERFAMILY Protein kinase-like (PK-like) 674 961 IPR011009 -
Amo05g3762 994 SUPERFAMILY RNI-like 216 576 - -
Amo05g3762 994 Gene3D Ribonuclease Inhibitor 334 607 IPR032675 -
Amo05g3762 994 ProSiteProfiles Protein kinase domain profile. 682 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3762 994 SMART serkin_6 682 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3762 994 Gene3D Ribonuclease Inhibitor 197 333 IPR032675 -
Amo05g3762 994 Gene3D Ribonuclease Inhibitor 23 196 IPR032675 -
Amo05g3762 994 SUPERFAMILY L domain-like 24 276 - -
Amo05g3762 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Amo05g3762 994 SMART LRR_typ_2 493 517 IPR003591 -
Amo05g3762 994 SMART LRR_typ_2 134 158 IPR003591 -
Amo05g3762 994 SMART LRR_typ_2 303 327 IPR003591 -
Amo05g3762 994 SMART LRR_typ_2 232 256 IPR003591 -
Amo05g3762 994 SMART LRR_typ_2 541 565 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3762 Amo-Chr5 103231128 103234781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3762 21 984 Receptor kinase-like Gene Family AT5G25930 49.641 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo05g3762 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3762 - - gmx:100785907 1395.56