Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3756 AGGCGACCAACATTTTTGTTCCTTTTTTTTTCTATGGCGATTTCAAATTCGCATTACATTTTGTGTGTTACAATAGCAATCCTTGTGATMGTTGTTCAAAATTCAAGAAGTYCATATTWCCGGCACCATGATGATGGCACTAGAAAGGGAATTCGATTGAGGAARGGATTATTGTCCAACATGAGTAGGATAGAGTTCTCGGAAGAACAGTTCATGAAATGGGTCAACTTTGTTGGTAACCTCAATCATTCAATGTTCAAGGCTGCAAAGAACAAGCTCTTTGCTTCCTACACTTTGCATGTTGATAACAACCCTGCACTTGGTGACTTCACTTCCATTCAAGACGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTCCTCATCAAGGTTCATGCAGGTCTTTACACGGAGAAAGTGAGCATTCCTCAATTGAAATGGTTCATAACAATAGAAGGAGCAGGTGCAGATAAAACAATAGTTCAATATGGTGACACAGCACAAACACCTGGCTCAAATGGGAGGCCATTGGGAACCTACGGTTCTGCTACTTTTGCTGTTAATTCACCTTATTTTATTGCAAAGAACATCACATTCAAGAACACTACTCCAGTCCCTGCACCAGGAGCAATTGGGAAACAGGCAGTGGCATTCAGGATTTCAGCGGACACAGCAGCATTCTATGGATGCAGTTTCTTGGGTGCACAGGACACACTGTATGATCATATGGGAAGACATTATTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTCGGAAACGCTCTCTCTCTATTTGAGGGGTGTCACGTGCATGCAATAGCACAGAATATGGGAGCAGTAACAGCGCAGGGGAGGAGTAGCATGTTGGAGGACACGGGGTTCTCATTCGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTGGGAAGGGCATGGGGTCCCTTTTCTCGCGTGGTATTCGCCTATACATATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAATCGTGAATTGACTGTATTCTATGGACAATACAAATGCACAGGAGCGGGAGCAAGCTTTGCTGGGAGGGTATCATGGTCAAGGGAACTCACTGACGATGAAGCCAAGCCTTTTCTTTCTCTTTCCTTTGTTGATGGCACGGAATGGATCAATCTTTGA 1194 0.4347 RRPTFLFLFFSMAISNSHYILCVTIAILVIVVQNSRSXYXRHHDDGTRKGIRLRKGLLSNMSRIEFSEEQFMKWVNFVGNLNHSMFKAAKNKLFASYTLHVDNNPALGDFTSIQDAIDSLPSINLVRVLIKVHAGLYTEKVSIPQLKWFITIEGAGADKTIVQYGDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTAAFYGCSFLGAQDTLYDHMGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNMGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRELTVFYGQYKCTGAGASFAGRVSWSRELTDDEAKPFLSLSFVDGTEWINL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3756 397 PANTHER PECTINESTERASE 27 396 - -
Amo05g3756 397 Pfam Pectinesterase 108 391 IPR000070 GO:0030599|GO:0042545
Amo05g3756 397 SUPERFAMILY Pectin lyase-like 95 396 IPR011050 -
Amo05g3756 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 27 396 - -
Amo05g3756 397 Gene3D - 95 397 IPR012334 -
Amo05g3756 397 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3756 Amo-Chr5 102783295 102786853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3756 110 395 Carbohydrate Esterase AT5G47500 50.871 6.10e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3756 K01051 - gmx:100793314 640.573