Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3747 ATGTCGTGGCAAACTTACGTGGATGAGCACTTGATGTGCGACATTGACGGCTCCGGCCAACATCTCACCGCCGCCGCCATCATCGGCCACGACGGCTCCATCTGGGCTCAAAGCTCTTCCTTCCCTCAGATTAAGCCTCAGGAGGTTACTGATATCATGAAGGATTTTGATGAGCCCGGTCATCTTGCTCCTACTGGTTTGCACATTGCGGGCGTAAAATACATGGTAATTCAGGGAGAGCCTGGAGCTGTCATCCGTGGGAAGAAGGGATCTGGAGGCATCACCATAAAGAAAACCGGGCAAGCTCTAGTTTTCGGCGTCTATGAGGAACCAGTTACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTCGTTGATCAGGACGGCAGTGTTTGGGCTCAGAGCTCTAATTTCCCTCAGTTCAAGCCTGAGGAAATTACTGCTATCATGAACGACTTTGCTGAGCCTGGATCGCTCGCCCCTACCGGGTTGTACCTCGGTGGCACCAAATACATGGTTATCCAAGGTGAACCCGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACCATTAAGAAGACGAATCAGGCGTTGATCATCGGAATCTACGATGAGCCAATGACTCCAGGGCAGTGCAACATGATTGTTGAAAGGCTGGGTGATTATCTCATTGATACGGGTCTTTAA 705 0.5078 MSWQTYVDEHLMCDIDGSGQHLTAAAIIGHDGSIWAQSSSFPQIKPQEVTDIMKDFDEPGHLAPTGLHIAGVKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLVDQDGSVWAQSSNFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDTGL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3747 234 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Amo05g3747 234 Gene3D Dynein light chain 2a, cytoplasmic 130 234 - -
Amo05g3747 234 Gene3D Dynein light chain 2a, cytoplasmic 1 129 - -
Amo05g3747 234 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Amo05g3747 234 SUPERFAMILY Profilin (actin-binding protein) 130 233 IPR036140 -
Amo05g3747 234 Pfam Profilin 1 131 IPR005455 GO:0003779
Amo05g3747 234 PANTHER PROFILIN 130 234 - -
Amo05g3747 234 PANTHER PROFILIN 130 234 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Amo05g3747 234 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Amo05g3747 234 CDD PROF 131 233 IPR005455 GO:0003779
Amo05g3747 234 PANTHER PROFILIN 1 131 - -
Amo05g3747 234 SMART prof_2 1 130 IPR005455 GO:0003779
Amo05g3747 234 SMART prof_2 131 234 IPR005455 GO:0003779
Amo05g3747 234 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Amo05g3747 234 CDD PROF 2 132 IPR005455 GO:0003779
Amo05g3747 234 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3747 Amo-Chr5 102626339 102634604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3747 128 234 Cytoskeleton Gene Families AT4G29340 72.897 2.32e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3747 K05759 - thj:104811727 250.366