Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3738 ATGAATAATAATAAGATAAGCAACTTGAGCTCCGTGAGTAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGAGGATCCAAGCAGTGCCCCGGTTGCGGCCACAAGTTTGAATCCAAACCGGATTGGCTAGGTTTACCAGCAGGAGTGAAGTTTGATCCAACAGATCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGCCTTCAAAGGCATACACAACAGGAACAAGAAAGAGGAGAAAGATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAGACCGGTAAAACAAGACCGGTCATGGTTAACGGAAAACAGAAGGGTTGCAAGAAGATTTTGGTACTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAAAAGACGAATTGGGTGATGCATCAATACCATTTGGGGCAGAATGAGGAGGAGAAAGAAGGAGAGCTTGTTGTGTCCAAGATATTCTACCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCATCATTGCTACGGCCGAAGGGAGTGGAGAGCCACTACAAAATAGTAGAAGAGATAGCGGAAGTGGAAGTTGTTCTTCTAAGGAAATTAATATCGGTCATAGGGATGAGATGTCTGCTGTGGTTGGACTTCATCCCATTAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGATGAAGTAGTACATGAACATGTAAATCATCATCATCAGCAACAACAACAACATCATCATCATCAACATCATCAAATTGCAACATCGGCATTCCATATAAGTAGGCCTTCACATCCAATCTCTACCTTGATATCTCCACCACCACTTCACCACACATCCATCATCTTAGACGATAATTCCTACCAAGTCTCCAGAATAATGCTCCAAAATGAACATTTCCAGGAGTCATCCATCACAAACACACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1065 0.4423 MNNNKISNLSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVEPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQNEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTIIATAEGSGEPLQNSRRDSGSGSCSSKEINIGHRDEMSAVVGLHPIRKSFDEVGIGEASTAREVQASGSCDEVVHEHVNHHHQQQQQHHHHQHHQIATSAFHISRPSHPISTLISPPPLHHTSIILDDNSYQVSRIMLQNEHFQESSITNTQEAEWLKYSSYWPDPDNPDHHG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3738 354 MobiDBLite consensus disorder prediction 259 280 - -
Amo05g3738 354 SUPERFAMILY NAC domain 45 165 IPR036093 GO:0003677|GO:0006355
Amo05g3738 354 MobiDBLite consensus disorder prediction 185 212 - -
Amo05g3738 354 Gene3D NAC domain 69 169 IPR036093 GO:0003677|GO:0006355
Amo05g3738 354 ProSiteProfiles NAC domain profile. 4 165 IPR003441 GO:0003677|GO:0006355
Amo05g3738 354 Pfam No apical meristem (NAM) protein 75 146 IPR003441 GO:0003677|GO:0006355
Amo05g3738 354 MobiDBLite consensus disorder prediction 185 209 - -
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 73 231 - -
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 73 231 IPR044799 GO:0003700
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 72 IPR044799 GO:0003700
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 251 326 IPR044799 GO:0003700
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 72 - -
Amo05g3738 354 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 251 326 - -
Amo05g3738 354 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3738 Amo-Chr5 102496545 102500934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3738 13 351 NAC Transcription Factor Family AT5G56620 43.662 2.98e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g3738 NAM 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3738 - - gmx:100795246 537.724