Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3727 ATGATGCTCGGGGAGCACCATCGTGCAAATCCTACGGTTCACGTGCCACCGTGGCCGATCCTCGATGATCAAACGGCTGACATGTACTCTCCTTATTCCGTAACCGAAGGCAATGCTGGCGCAGGCGATTACTCACCTTACTATCTACAAGAAGCTCTGTCCGCCTTGCAGCGATACCTGCCGTCGAATGATGCTGCCGGCGACGGTGGTGATTCCGACGGGGAGGCTCAGGCTGACGCGCCGGTTGACGCGTACTCGTGTGACCAGTTCCGCATGTACGAGTTCAAAGTGAGGCGATGCGCGCGCGGGAGGTCGCACGACTGGACGGAGTGTCCGTACGCTCATCCTGGCGAGAAGGCTCGCCGTCGTGATCCACGGAAGTTTCACTACTCCGGGACGGCGTGTCCCGATTTCCGCAAGGGAAACTGTAAGAAAGGCGACTCGTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTTCATCCAGCGAGGTATCGTACTCAGCCGTGCAAGGACGGCACGAGCTGCCGCCGGAGGGTGTGCTTCTTCGCGCACACGCCGGAGCAGCTCCGTGTCCTCCCGCAACAGAGTCCGCGAAGCGTGGATTCGTACGACGGATCTCCATTAAGACAAGTCTCGATGCCGTTCGTGTCGTCACCGACTTCAGTTTCGCCGCCGGTTAGTTCTCCGGTGGATTCTCCGCCGATGTCGCCGATGATGAGGTCGCTTGGCTCAAGTAACATGTCTGATATGGTTGTTGCTCAACTGAGAAACTTGCAGCTTGGGAAGGTGAAATCGATGCCTAATAGTAACAGGAACGTGACGGTTGGATCTCCGGGTTTCGGATCTCCCCGCGGATCTGTAATCCGGCCCGGATTCTGCAGTCTACCAACAACACCAACACAGGCACCGGTTCGGTTCGGGTCGAATTGTTTCGAGTTGTGGGAGCAGAGTTTCGAGGAGGAGCCAGTTATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCTCTGGATAGGTCCGGTTCTGGTTCGGGTCGTCAATCGGGTGGAGTCCCGGATCTTGGGTGGGTCTCTGAGCTTGTTAAGTGA 1122 0.5731 MMLGEHHRANPTVHVPPWPILDDQTADMYSPYSVTEGNAGAGDYSPYYLQEALSALQRYLPSNDAAGDGGDSDGEAQADAPVDAYSCDQFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVDSYDGSPLRQVSMPFVSSPTSVSPPVSSPVDSPPMSPMMRSLGSSNMSDMVVAQLRNLQLGKVKSMPNSNRNVTVGSPGFGSPRGSVIRPGFCSLPTTPTQAPVRFGSNCFELWEQSFEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGSGRQSGGVPDLGWVSELVK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3727 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 373 - -
Amo05g3727 373 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Amo05g3727 373 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Amo05g3727 373 MobiDBLite consensus disorder prediction 344 373 - -
Amo05g3727 373 Gene3D - 129 193 - -
Amo05g3727 373 PANTHER UNKEMPT FAMILY MEMBER 7 373 IPR045234 -
Amo05g3727 373 MobiDBLite consensus disorder prediction 215 238 - -
Amo05g3727 373 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Amo05g3727 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3727 Amo-Chr5 102353540 102355720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3727 85 238 C2H2 Transcription Factor Family AT5G12850 58.125 1.87e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo05g3727 zf-CCCH 9.9e-06 CL0537