Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3713 ATGAATAATAATAAGATAAGCAACTTGAGCTCCGTGAGTAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGAGGATCCAAGCAGTGCCCCGGTTGCGGCCACAAGTTTGAATCCAAACCGGATTGGCTAGGTTTACCAGCAGGAGTGAAGTTTGATCCAACAGATCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCCCACCATTGAAGGTGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTAAGTAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACAGGAACAAGAAAGAGGAGAAAGATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAGACCGGTAAAACAAGACCGGTCATGGTTAACGGAAAACAGAAGGGTTGCAAGAAGATTTTGGTACTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAAAAGACGAATTGGGTGATGCATCAATACCATTTGGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTTGTGTCCAAGATATTCTACCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCATCATTGCTACGGCCGAAGGGAGTGGAGAGCCACTACAAAATAGTAGAAGAGATAGCGGAAGTGGAAGTTGTTCTTCTAAGGAAATTAATATCGGTCATAGGGATGAGATGTCTGCTGTGGTTGGAGTTAATAATACTCCAATCACGAGCTTCACTCATCCCTTGGACATTCATCATCACCTCAAATCGGATCATTTTAGCTTCATTCCATTTAGGAAAAACTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGATGAAGTAGTACATGAACATGTAAATCATCATCATCATCAACAACAACAACAACATCATCATCATCATCATCAAATTGCAACATCGGCATTCCATATAAGTAGGCCTTCACATCCAATCTCTACCTTGATATCTCCACCACCACTTCACCACACATCCATCATCTTAGACGATAATTCCTACCAAGTCTCCAGAATAATGCTCCAAAATGAACATTTCCAGCAACAACAACAACAACAACATCAACACCATCATCATAAAATTGGAGCAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1386 0.4322 MNNNKISNLSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTIIATAEGSGEPLQNSRRDSGSGSCSSKEINIGHRDEMSAVVGVNNTPITSFTHPLDIHHHLKSDHFSFIPFRKNFDEVGIGEASTAREVQASGSCDEVVHEHVNHHHHQQQQQHHHHHHQIATSAFHISRPSHPISTLISPPPLHHTSIILDDNSYQVSRIMLQNEHFQQQQQQQHQHHHHKIGARSASGLEELIMGCTSSDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3713 461 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 444 IPR044799 GO:0003700
Amo05g3713 461 MobiDBLite consensus disorder prediction 231 257 - -
Amo05g3713 461 SUPERFAMILY NAC domain 45 211 IPR036093 GO:0003677|GO:0006355
Amo05g3713 461 MobiDBLite consensus disorder prediction 231 255 - -
Amo05g3713 461 Pfam No apical meristem (NAM) protein 51 192 IPR003441 GO:0003677|GO:0006355
Amo05g3713 461 Gene3D NAC domain 59 215 IPR036093 GO:0003677|GO:0006355
Amo05g3713 461 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 444 - -
Amo05g3713 461 ProSiteProfiles NAC domain profile. 50 211 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3713 Amo-Chr5 102080840 102086284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3713 13 458 NAC Transcription Factor Family AT5G56620 51.702 4.01e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g3713 NAM 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3713 - - aip:107641312 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0854 03 17470428 17473048 Amo05g3713 05 102080840 102086284 PCT