Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3678 ATGGTGGTAGTAGTGCCAAATCAGGATCACCATCATTCCTCCTTCATCTTCAAAAGGCTCAAGAGGGAGGAATGCAGCCACACCAAACATGATTCTATCTTCTCCAAATGGAAGATTTTAATTGGTGCTTCCGATTGGGAAGATCATTCAAAGGGAAAAGAAGGATGTGCAAGATACAGGATCCATAACCTGCCAGAAAAAGCTTGTCCAGGTGTATATGAGCTTGGAATAGCTGTGTCATCAAGGAGTGATTTGGGGAGGCAAATTTACAAACTTGCCCCTGAGTGTGTAGTTGTGACTTACCTTGGAGAAACTGATAATGTAAGGGATAGGTTGCAATGCTATGGCAGAGATGGATCTCATTTGCACACCAAAACTTCTCTTGAATACTCAATTTATGATTCTCTCCAAAAGAAGAGGCCATTGTTTCAAGAGATTTTTTCACAGGGATACCCTATTGTTTATAGATGGGTTGCTATGAACAATAAAGAAGAGGCCAAGAAAATAGAGTCTCAGCTGCTCAAAACATTTGATTATGCATGGAATATAAGCAGTAATGGTTGCCGGCGGCCGAACGATATTCTTCAAAAGATAAACAAGATTTCTTCCAGCACAAGAACAATCTCAAATATGGCCAGGGAGCTCCTACCTTTCACTCGAAAACAAGTCGGTATCCGAATCAAAGTAGATGAAGAAGAAGAAGACAGTGATGGCATCTACAGTTTCCTATCTAGGGTGTTCAAATTCAACAAATCAAGGCCTAGGAAAGTCAAAAATATCGTCATTGCCAATCAGCAGGATGCTATAATTTGTGGGGTGGCTTTAGGTGATGGTTCTGTCTGTATAAATACACCAGCTGAAAGAAGAAAGAGGTGTCCTCAACACAAAGGAATGAGAATTAATAATGTGTCCCCTGCCAAAGCATTTGTATCCCCAAAATCAAAGAGCAATTTGGTTTCAGAAATCAATAAGTTTATGGACCAAAATGTTAGCAATGATGATGTACAAGGCATTCCAAAAAAACCAGTTGAAGAGAGTAGTAGTGAAACCAATATATGTGGAATCATATTGTATGATGGTTCACCTTGTAGGAGAGTACCGGTTAAAGGAAGGAAAAGGTGCCAAGAGCATAAAGGAAAGAAAATTTGTGCCAAGCAGAAGATGATTTAA 1170 0.3966 MVVVVPNQDHHHSSFIFKRLKREECSHTKHDSIFSKWKILIGASDWEDHSKGKEGCARYRIHNLPEKACPGVYELGIAVSSRSDLGRQIYKLAPECVVVTYLGETDNVRDRLQCYGRDGSHLHTKTSLEYSIYDSLQKKRPLFQEIFSQGYPIVYRWVAMNNKEEAKKIESQLLKTFDYAWNISSNGCRRPNDILQKINKISSSTRTISNMARELLPFTRKQVGIRIKVDEEEEDSDGIYSFLSRVFKFNKSRPRKVKNIVIANQQDAIICGVALGDGSVCINTPAERRKRCPQHKGMRINNVSPAKAFVSPKSKSNLVSEINKFMDQNVSNDDVQGIPKKPVEESSSETNICGIILYDGSPCRRVPVKGRKRCQEHKGKKICAKQKMI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3678 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 17 345 - -
Amo05g3678 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 321 385 IPR038909 GO:0003677|GO:0006355
Amo05g3678 389 Pfam GIY-YIG domain-containing protein 34 195 - -
Amo05g3678 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 321 385 - -
Amo05g3678 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 17 345 IPR038909 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3678 20 384 HRT Transcription Factor Family AT5G56780 42.037 5.23e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Amo05g3678 None None None