Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3616 ATGTGGGATGCCAAGTGGCTTATAGATCCCAAGCAACTCTTTGTTGGCCCAAAAATTGGGGAAGGTGCTCATGCCAAGGTCTATGAGGGAAAGTATAAAAATCAGAATGTTGCTGTTAAGATTATCAACAAAGGAGAAACCCCAGAAGAGATTTCGAGGAGGGAAGCTCGGTTCGGAAGAGAGGTAGCCATGCTATCGAAAGTTCAACACAAGAATCTGGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTATTAGGTGGAACGCTGCGCAAATATCTCTTGAGRATGCGGCCAAACTGCTTGGATATGCGTGTGGCAGTTGGATTTGCTCTTGATATTGCTCGAGCAATGGAATGRTTACACTCCCATGGGATCATTCATCGGGACCTTAAACCGGATAATTTGATCTTAACAGGAGATCATAAAACAGTTAAACTTGCTGATTTCGGTCTGGCCAGAGAAGAGTCTTTAACGGAGATGATGACTGCGGAAACTGGGACATACCGTTGGATGGCTCCAGAACTTTATAGCACCGTCACTCTGCGACAAGGCGAGAAGAAACATTACAACCATAAGGTTGATGCTTACAGCTTCGCGATTGTGTTGTGGGAGCTGATCCATAATAAGTTGCCATTTGAAGGCATGTCTAATTTACAGGCCGCATACGCGGCTGCTTTTAAGAACACAAGGCCTAGTGCTGATGACCTTCCTGAGGATTTAGCCATGATTGTAACTTCATGTTGGAAGGAGGATCCAAATGACCGYCCGAATTTCACGCAAATCATACAGATGCTTCTCCGATATCTCTCCACCATTTCTCCACAAGAGCCGGTTGTTCCTCAGCGGATGAATTCATCGGAGAATGCCGTATTGCCACCGGAGTCCCCCGGCACAAGCGCTTTGATGTCTAGGAGAGATGACTCCGGGGAAATCCCGAAAGCCGGTATGGAAGACAGACCTAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1020 0.4559 MWDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREARFGREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLRMRPNCLDMRVAVGFALDIARAMEXLHSHGIIHRDLKPDNLILTGDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSADDLPEDLAMIVTSCWKEDPNDRPNFTQIIQMLLRYLSTISPQEPVVPQRMNSSENAVLPPESPGTSALMSRRDDSGEIPKAGMEDRPKGFFFCFNQCY* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3616 339 PANTHER PROTEIN KINASE ATN1 3 316 - -
Amo05g3616 339 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Amo05g3616 339 ProSitePatterns Protein kinases ATP-binding region signature. 19 40 IPR017441 GO:0005524
Amo05g3616 339 CDD STKc_MAP3K-like 19 273 - -
Amo05g3616 339 SUPERFAMILY Protein kinase-like (PK-like) 5 299 IPR011009 -
Amo05g3616 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Amo05g3616 339 PIRSF TyrPK_CSF1-R 105 323 - -
Amo05g3616 339 PIRSF TyrPK_CSF1-R 1 115 - -
Amo05g3616 339 SMART serkin_6 13 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3616 339 Pfam Protein tyrosine and serine/threonine kinase 16 273 IPR001245 GO:0004672|GO:0006468
Amo05g3616 339 ProSiteProfiles Protein kinase domain profile. 13 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3616 339 PANTHER SERINE-THREONINE PROTEIN KINASE 3 316 - -
Amo05g3616 339 Gene3D Transferase(Phosphotransferase) domain 1 94 300 - -
Amo05g3616 339 MobiDBLite consensus disorder prediction 291 322 - -
Amo05g3616 339 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672|GO:0006468
Amo05g3616 339 PRINTS Tyrosine kinase catalytic domain signature 127 145 IPR001245 GO:0004672|GO:0006468
Amo05g3616 339 PRINTS Tyrosine kinase catalytic domain signature 201 223 IPR001245 GO:0004672|GO:0006468
Amo05g3616 339 PRINTS Tyrosine kinase catalytic domain signature 244 266 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3616 Amo-Chr5 100276110 100279471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3616 3 339 MAP Kinase Kinase Kinase AT5G50180 78.932 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo05g3616 PK_Tyr_Ser-Thr 2.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3616 - - mnt:21403469 620.157