Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3613 ATGGCGAAATCATTCTCTCTAACCCACCACCTTTCCCTCCTACTCCTCCATTCCCGTTCTCACCGTCTCTTCATCCCCTCCACGACACTCCTCCCTCTCCCTCTTCATCACCATCACCCCTTCTCTCTCTCCCCATTCCACAAATCCCTCTCTACCAACCCCACCCCATACCCTCTTCAATACGAACTCATCATAAATCGCCCCGTTCAAAAACACCCACCACGTGTTCGACGAAATGCCCCACAAGCCCTCCCTGAACCCCACGAACCAGACGAACCTGAGGAACAAGAACCGACTTCGGAGCTTCGCCTTGACAGCTGGGTCGACCGGAAATTGAGCTTTGACTCCGATTCTGGTCAATCCAGTTCGTCAAATTTGGAACTTGACAAGGCCAAGAGGAAGTACTACAACAAGAGAAGGAAGAGGATGTACGGGTCGGATTCCGAGGAAGAAGAGGCACGGTTACGGAACGAGGAGAAGTTTGTGGAGCTGAAGCCTGAGGTGGTGGAGCTTCCAACTCTGCACCGTAGAGAAGAAGAGTTGTATTTTTATGATGCTTTTGCTTACCCTTGGGAGAAGGAGAAGCACTACAAGATGGTGTATCAGTTGGAGAAGAAGTACTTCCCTAATCAATGCCTTGACAAGGCATTTCTCAAACCGGGAGAGTCGAATTTGAATGCGAATGCAAATGCAAATTTAAATGAAAATGAAAATGTAGATAGTGGTGTGAGGAGCAAGGGGAAGGGTAGGAAGACTGCTGGTGTTAGGGAGGAGAAGAAGGATGATAAGGGTGATAACAAGTTGGTCTTTTTTGATGAGAAGACGGAAGAGGAAAAGAAGGGTGATGGGGGTTTGGTGAAGGATCTTAGGGAGAAGAAGGTCGAGGAATTCTTTAAGGGCTTGAAGAGAGTTGACAAAAAGGATGGTGAAGTTAGTAGTGTCAATGCAGAGCCTTTTCTTTCGTCGAGGAGGACTGGACTCCCCCCGGTATGGGACAGTCCACATGGCACTGTGGTTTTGATTAACAAACCAAAGGGCTGGACCTCATTCACAGTTTGTGGTAAGCTGCGCCGTGTTGTTAAAGTAAAAAAGGTAGGCCATGCTGGAACACTTGATCCCATGGCTACTGGTTTATTGATTGTTTGTGTTGGAAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATCAAGGGTTATAGTGGGGTCTTCCGTCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAACACATCAAAGATGAGGACATAAAGAGAAACGCTGCATCTTTTTGCGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGGGGTGAAAGGATGTACGACAAGGCGAGGAGAGGAGAAAACGTTGAACTTTCACCTAGACGAATCTCAATACTCCAGTTTGACATAGAGCGCAGCTTGGATGACAGACAAAATTTGATTTTTAGGGTGACGTGTTCTAAAGGGACATACATTCGGTCATTGTGCGCGGATTTTGGGAAGGCTGTTGGCAGTTGCGCCCATTTAACTGCTCTGCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCTTGGGACTTCCAAGAACTTGAAGAGGCTATTACCAAAACTTACCTCTAA 1668 0.4706 MAKSFSLTHHLSLLLLHSRSHRLFIPSTTLLPLPLHHHHPFSLSPFHKSLSTNPTPYPLQYELIINRPVQKHPPRVRRNAPQALPEPHEPDEPEEQEPTSELRLDSWVDRKLSFDSDSGQSSSSNLELDKAKRKYYNKRRKRMYGSDSEEEEARLRNEEKFVELKPEVVELPTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPNQCLDKAFLKPGESNLNANANANLNENENVDSGVRSKGKGRKTAGVREEKKDDKGDNKLVFFDEKTEEEKKGDGGLVKDLREKKVEEFFKGLKRVDKKDGEVSSVNAEPFLSSRRTGLPPVWDSPHGTVVLINKPKGWTSFTVCGKLRRVVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNAASFCGEIWQVPPMFSAIKVGGERMYDKARRGENVELSPRRISILQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKAVGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKTYL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3613 555 CDD PseudoU_synth_EcTruB 338 549 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo05g3613 555 SUPERFAMILY Pseudouridine synthase 337 550 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo05g3613 555 Pfam TruB family pseudouridylate synthase (N terminal domain) 357 507 IPR002501 GO:0006396
Amo05g3613 555 TIGRFAM TruB: tRNA pseudouridine(55) synthase 337 546 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo05g3613 555 MobiDBLite consensus disorder prediction 68 102 - -
Amo05g3613 555 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 314 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo05g3613 555 MobiDBLite consensus disorder prediction 228 261 - -
Amo05g3613 555 MobiDBLite consensus disorder prediction 241 261 - -
Amo05g3613 555 Pfam tRNA pseudouridylate synthase B C-terminal domain 508 551 IPR032819 -
Amo05g3613 555 Gene3D Pseudouridine synthase 332 554 - -
Amo05g3613 555 Hamap tRNA pseudouridine synthase B [truB]. 335 555 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3613 Amo-Chr5 100236358 100240990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3613 338 529 NAC Transcription Factor Family AT3G57150 33.333 1.61e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3613 K03177 - zju:107415230 685.641