Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3583 ATGGCTAGCTGGGTTATTGACATTGGAGGACTTGCAAAGAAAGTGAAGAATAATACACTGCCATTAGCTGATCAAATCAATGACTGTGGAGCATATTGTGAATGTCCAATATGTCATTATCACATTGATAACATTGATGTTTCTCCTGAGTGGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCCGACGTAGAACTGTTGGAACATTTGGCAGCAAAATGTTGTGTTGGAAACAAAGTGCCTCATGCCTTTATCCAAGATTTCATCCCAACACTAGAAGGAGACCAAGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGGCCAGTGTTCATTTCTTTCACAAAACAACTAATGCATATGCTACCGGACAACGAAAGCGTCGAAAGATTAATCATCAACTAGGCCTAAGTGAGGAGCATGTTCGCTGGCATAAGACCGGTAAGACCAAAGCTGTAACAGAAAATGGAGTACACAAGGGCTTCAAGAAGATCATGGTTCTTTACGTAAGGCCTAAGAGAGGAGCAAAGCCGAATAAATCGAAATGGGTGATGCATCAGTACCATCTAGGGAATGATGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGCAGAAGAAGAAAACTAAGAAGAATAAGCTGAATCCATTGGTGGCTGAAGATTCTGTCATGGCATTACAAGCAAGTCCAAGAACACCGAATCCAAATCCACCAAAACGGCCTCGGACAGGAAAATCTGTTGACTGTGATGACAATTTTGATGAAACTGACCTTATGCTATTCACTCAGGATGGAAAGCCTACTATTCATGGAGAATCTCTTGCCCCACCACCATCTGAAGTTCATGGTGATGAAAATAATGGAGGCTTTAACAACACTGCATTGTTATCTGTTGAAACACAACCTGTTGAAAACTCTGACTTTATTGGATTGGATGATATCTTACTATGCAAGGAACAGACATTAGATTCTTCTTCTGCTTACCTAAATGATTCTGGTTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGGAAATGCAGCTGAATTGTTTGGGGATGTGAATGATTGTTATGGAATTTCAGTGCTGGATAACCTGGGACTGGACAGTCCTCCTGATTTTGATCTTTCTGTAAGCACTCGATCACCCTTGTCGTCGTAG 1203 0.4156 MASWVIDIGGLAKKVKNNTLPLADQINDCGAYCECPICHYHIDNIDVSPEWPGFPAGVKFDPSDVELLEHLAAKCCVGNKVPHAFIQDFIPTLEGDQGICYTHPENLPGAKKDGASVHFFHKTTNAYATGQRKRRKINHQLGLSEEHVRWHKTGKTKAVTENGVHKGFKKIMVLYVRPKRGAKPNKSKWVMHQYHLGNDEGEKEGEYVVSKIFYQQKKKTKKNKLNPLVAEDSVMALQASPRTPNPNPPKRPRTGKSVDCDDNFDETDLMLFTQDGKPTIHGESLAPPPSEVHGDENNGGFNNTALLSVETQPVENSDFIGLDDILLCKEQTLDSSSAYLNDSGLKSNNLKGFACNANGNAAELFGDVNDCYGISVLDNLGLDSPPDFDLSVSTRSPLSS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3583 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 392 IPR044799 GO:0003700
Amo05g3583 400 MobiDBLite consensus disorder prediction 236 259 - -
Amo05g3583 400 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 3 392 - -
Amo05g3583 400 ProSiteProfiles NAC domain profile. 54 215 IPR003441 GO:0003677|GO:0006355
Amo05g3583 400 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Amo05g3583 400 Pfam No apical meristem (NAM) protein 55 196 IPR003441 GO:0003677|GO:0006355
Amo05g3583 400 Gene3D NAC domain 63 221 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3583 Amo-Chr5 99715107 99718956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3583 35 215 NAC Transcription Factor Family AT1G28470 53.763 1.47e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g3583 NAM 5.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3583 - - ahf:112799760 544.273