LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g3583	ATGGCTAGCTGGGTTATTGACATTGGAGGACTTGCAAAGAAAGTGAAGAATAATACACTGCCATTAGCTGATCAAATCAATGACTGTGGAGCATATTGTGAATGTCCAATATGTCATTATCACATTGATAACATTGATGTTTCTCCTGAGTGGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCCGACGTAGAACTGTTGGAACATTTGGCAGCAAAATGTTGTGTTGGAAACAAAGTGCCTCATGCCTTTATCCAAGATTTCATCCCAACACTAGAAGGAGACCAAGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGGCCAGTGTTCATTTCTTTCACAAAACAACTAATGCATATGCTACCGGACAACGAAAGCGTCGAAAGATTAATCATCAACTAGGCCTAAGTGAGGAGCATGTTCGCTGGCATAAGACCGGTAAGACCAAAGCTGTAACAGAAAATGGAGTACACAAGGGCTTCAAGAAGATCATGGTTCTTTACGTAAGGCCTAAGAGAGGAGCAAAGCCGAATAAATCGAAATGGGTGATGCATCAGTACCATCTAGGGAATGATGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGCAGAAGAAGAAAACTAAGAAGAATAAGCTGAATCCATTGGTGGCTGAAGATTCTGTCATGGCATTACAAGCAAGTCCAAGAACACCGAATCCAAATCCACCAAAACGGCCTCGGACAGGAAAATCTGTTGACTGTGATGACAATTTTGATGAAACTGACCTTATGCTATTCACTCAGGATGGAAAGCCTACTATTCATGGAGAATCTCTTGCCCCACCACCATCTGAAGTTCATGGTGATGAAAATAATGGAGGCTTTAACAACACTGCATTGTTATCTGTTGAAACACAACCTGTTGAAAACTCTGACTTTATTGGATTGGATGATATCTTACTATGCAAGGAACAGACATTAGATTCTTCTTCTGCTTACCTAAATGATTCTGGTTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGGAAATGCAGCTGAATTGTTTGGGGATGTGAATGATTGTTATGGAATTTCAGTGCTGGATAACCTGGGACTGGACAGTCCTCCTGATTTTGATCTTTCTGTAAGCACTCGATCACCCTTGTCGTCGTAG	1203	0.4156	MASWVIDIGGLAKKVKNNTLPLADQINDCGAYCECPICHYHIDNIDVSPEWPGFPAGVKFDPSDVELLEHLAAKCCVGNKVPHAFIQDFIPTLEGDQGICYTHPENLPGAKKDGASVHFFHKTTNAYATGQRKRRKINHQLGLSEEHVRWHKTGKTKAVTENGVHKGFKKIMVLYVRPKRGAKPNKSKWVMHQYHLGNDEGEKEGEYVVSKIFYQQKKKTKKNKLNPLVAEDSVMALQASPRTPNPNPPKRPRTGKSVDCDDNFDETDLMLFTQDGKPTIHGESLAPPPSEVHGDENNGGFNNTALLSVETQPVENSDFIGLDDILLCKEQTLDSSSAYLNDSGLKSNNLKGFACNANGNAAELFGDVNDCYGISVLDNLGLDSPPDFDLSVSTRSPLSS*	401

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo05g3583	400	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	3	392	IPR044799	GO:0003700
Amo05g3583	400	MobiDBLite	consensus disorder prediction	236	259	-	-
Amo05g3583	400	PANTHER	NAC DOMAIN CONTAINING PROTEIN 44-RELATED	3	392	-	-
Amo05g3583	400	ProSiteProfiles	NAC domain profile.	54	215	IPR003441	GO:0003677\|GO:0006355
Amo05g3583	400	SUPERFAMILY	NAC domain	39	215	IPR036093	GO:0003677\|GO:0006355
Amo05g3583	400	Pfam	No apical meristem (NAM) protein	55	196	IPR003441	GO:0003677\|GO:0006355
Amo05g3583	400	Gene3D	NAC domain	63	221	IPR036093	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g3583	Amo-Chr5	99715107	99718956	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g3583	35	215	NAC Transcription Factor Family	AT1G28470	53.763	1.47e-62	202

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Amo05g3583		NAM	5.2e-20	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g3583	-		-	ahf:112799760	544.273

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