Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3580 AGTAACAATAATTCTTCCTTTTCAGTACCAACACAAATAGTGCCACATGCATATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCAATGGCCTTTAGTCTTTGAAGGATTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGAAAAGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGTAAAAGCATCACAGTTCCAAGTAAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATTGTAATTTCAGTTTGCTGCGATGATAGACCAGAACTTTTCAATGAACTCATTCAAGTCCTAAAACGGTTGCGGCTCATAAATCAAGATCAAAACATATTCAGAAGCAGCAAAACAGAAGCAGCAAAACATACTCAAAATAAAAAATATCAAAAAATCAGAATCCAAAATCAAGAAGGCAGCATAGAACAGGCGAGCTCACAGAACCTCAAAAAATCAAAATCTAAAATCAAGAAGGCAGCATAG 654 0.3777 SNNNSSFSVPTQIVPHAYDSAFASLQFQYQWPLVFEGFPEDRAASASKSHSQAEKRRREKINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSKTDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFNELIQVLKRLRLINQDQNIFRSSKTEAAKHTQNKKYQKIRIQNQEGSIEQASSQNLKKSKSKIKKAA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3580 217 CDD ACT_UUR-ACR-like 138 172 - -
Amo05g3580 217 MobiDBLite consensus disorder prediction 192 217 - -
Amo05g3580 217 Gene3D - 40 103 IPR036638 GO:0046983
Amo05g3580 217 MobiDBLite consensus disorder prediction 192 207 - -
Amo05g3580 217 Pfam Helix-loop-helix DNA-binding domain 48 94 IPR011598 GO:0046983
Amo05g3580 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Amo05g3580 217 PANTHER TRANSCRIPTION FACTOR BHLH30 18 163 IPR045847 GO:0003700|GO:0006355
Amo05g3580 217 PANTHER TRANSCRIPTION FACTOR BHLH51 18 163 - -
Amo05g3580 217 CDD bHLH_AtAIG1_like 40 117 - -
Amo05g3580 217 SMART finulus 51 100 IPR011598 GO:0046983
Amo05g3580 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3580 Amo-Chr5 99668094 99669193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3580 1 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 36.257 2.50e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g3580 HLH 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3580 - - adu:107459448 331.643