Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3537 ATGCTAACCCTCTCATCCTGCAAGGCAAATAAGGTTGCAATTGCTTCATCCGGTGCTCTACAACACTTGGCTGAATTTGTAAATAGCGGTGACATTCAGTTACAGCTTGATGTTGTGGCCACAATCCACAACCTCTCAACCTGCGAAGAGATTGTTCCATTGATCGTTGCTTCTGGCATTATACTTTCATTGCTTGAACTGGTCCACAACTCTGTGAAATCATCTCCGCTGGGTGAAAAGGCGATTGGTTTGCTCGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTGTTGGTGGGGCAATTCGGATACTGGTCGAGACTATTGAAGATGGATCATCACTAGGGAAAGAGCATGCAGTTGGTATACTTTTCCTTATATGCCAAAGTTGCAGAGAGAAATACAGAGGTTTGATTCTGAGAGAGGGAGTGATGCCAGGACTGCTTCAGTTAAGCATAGATGGAACGCGGAGAGCCAAGAACATGGCTCGAGAACTGTTGTTGCTTCTGAGGGATTACTCCGATTATAGTTCAAGACAAAAACAAATGAATCATGAGCTCATAGAGCGGATCATGGAAGAAATTGATGCAGATGGAGAGAAATTGGCTGATGCTAAGCTGCGTTTAGTGGAGGAGATGATTGCAAAGCTGAACACATAA 672 0.4405 MLTLSSCKANKVAIASSGALQHLAEFVNSGDIQLQLDVVATIHNLSTCEEIVPLIVASGIILSLLELVHNSVKSSPLGEKAIGLLENIVSSSESALCEAASVGGAIRILVETIEDGSSLGKEHAVGILFLICQSCREKYRGLILREGVMPGLLQLSIDGTRRAKNMARELLLLLRDYSDYSSRQKQMNHELIERIMEEIDADGEKLADAKLRLVEEMIAKLNT* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3537 223 Pfam Armadillo/beta-catenin-like repeat 9 46 IPR000225 GO:0005515
Amo05g3537 223 SUPERFAMILY ARM repeat 6 202 IPR016024 -
Amo05g3537 223 PANTHER U BOX DOMAIN-CONTAINING 1 203 - -
Amo05g3537 223 Gene3D - 2 98 IPR011989 -
Amo05g3537 223 Gene3D - 99 207 IPR011989 -
Amo05g3537 223 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 203 - -
Amo05g3537 223 SMART arm_5 48 90 IPR000225 GO:0005515
Amo05g3537 223 SMART arm_5 7 47 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3537 Amo-Chr5 98773144 98774224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3537 2 176 U-box Gene Family AT1G67530 32.955 5.76e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3537 - - lja:Lj2g3v0922610.1 337.035