Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3530 ATGACTGGGTTGGAGGAATTGAAGAAAAAGCTTGTACCTTTGTTTGATGCTGAGAAGGGCTTCTCAACAAGCTCAACCTTGGACCCTTGTGATTCTTACACTTTATCCGATGGTGGGACCGTGAACTTGTTAAGCAGATCATATGGGGTGTACAATATCAATGAGCTTGGGTTGCAAAAGTGCACATCTCGATCTGTTCACGAGACTGCTGATCAGAGTGAGAAAACATATAGGTGTGCCTCCCACGAGATGCGAATATTCGGAGCAATTGGTAGTGGTGCCAGCAGTATTGTCCAGAGAGCTATTCATATACCAACACATAGGATTCTAGCTTTGAAGAAGATTAATATCTTTGAGAAGGAGAAAAGACAGCAGCTCCTAACAGAGATAAGGGCACTATGCGAAGCGCCTTGTTATCAGGGTCTTGTAGAGTTTCATGGGGCATTTTACACTCCGGACTCTGGACAAATAAGCATAGCTCTGGAGTATATGGATGGAGGATCGCTTGCAGATATCTTGCGAAAGCATAGAAGGATACCTGAACCTATTCTTTCATCCATGTTTCAGAAGCTCCTACATGGTCTAAGATATCTTCATGGAGTCAGATATTTAGTTCACAGAGACATAAAGCCTGCCAATTTACTCATAAACCTCAAGGGGGAGCCGAAAATTACTGACTTTGGTATCAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACGTACATGTCTCCTGAGAGAATCCGAAATGAAAGCTATTCTTATCCAGCCGATATTTGGAGCTTTGGTCTTGCTCTCCTCGAGTGTGGAACAGGAGAATTCCCATATACAGCTAATGAGGGTCCTGTAAATCTTATGCTGCAGATTTTGGATGATCCATCACCATCCCCGTCAAAACAAGTGTTTTCGCCCGAGTTCTGCTCTTTTGTTGATGCTTGCTTACAGAAGGATCCAGAAAGTAGGCCAACTGCAGAACAGCTTCTTTTGCACCCTTTTATTACAAAGTATGAGAATGCGGAGATAGATTTAGCGGCATTTGTTCGAAGTGTTTTTGATCCTACACAAAGATTAAAGGATTTGGCAGATATGTTGACATTACATTATTACTTACTATTTGATGGACCTGATGATTTGTGGCAACACACAAGGAGCTTGTATAATGAAAACTCAATTTTCAAGTTCTCTGGGAAACAACATGTTGGTCCAAACAATATCTTCACAACCCTATCGAGTATTCGAAGTACGTTACTTGGCGATTGGCCTCCCGAGAAGTTGGTGCATGTCGTTGAAAAGCTTCAGTGTCGTGCTCACGGCGAAGATGGAGTCGCAATCAGGGTCTCAGGATCATTCATAATTGGGAATCAGTTTCTCATTTGTGGAGAGGGCATTCAAGTAGAAGGCTTACCAAACTTCAAGGATCTTGGAATTGATATTCCTAGCACGAGATTGGGTACATTTCATGAACAATTCATAGTGGAGGCAACAAACCTAATTGGATGCTACAACATTGTTAACCAAGAGTTGTATATTTGCCAATAA 1560 0.4205 MTGLEELKKKLVPLFDAEKGFSTSSTLDPCDSYTLSDGGTVNLLSRSYGVYNINELGLQKCTSRSVHETADQSEKTYRCASHEMRIFGAIGSGASSIVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRALCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRKHRRIPEPILSSMFQKLLHGLRYLHGVRYLVHRDIKPANLLINLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSFGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKQVFSPEFCSFVDACLQKDPESRPTAEQLLLHPFITKYENAEIDLAAFVRSVFDPTQRLKDLADMLTLHYYLLFDGPDDLWQHTRSLYNENSIFKFSGKQHVGPNNIFTTLSSIRSTLLGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGEGIQVEGLPNFKDLGIDIPSTRLGTFHEQFIVEATNLIGCYNIVNQELYICQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3530 519 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3530 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 517 IPR018222 -
Amo05g3530 519 Gene3D Transferase(Phosphotransferase) domain 1 166 364 - -
Amo05g3530 519 SMART serkin_6 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3530 519 SUPERFAMILY NTF2-like 365 462 IPR032710 -
Amo05g3530 519 CDD PKc_MAPKK_plant_like 85 345 - -
Amo05g3530 519 PANTHER - 2 518 - -
Amo05g3530 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 518 - -
Amo05g3530 519 Gene3D Phosphorylase Kinase; domain 1 51 165 - -
Amo05g3530 519 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Amo05g3530 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Amo05g3530 519 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3530 519 Gene3D - 365 517 - -
Amo05g3530 519 SUPERFAMILY Protein kinase-like (PK-like) 86 372 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3530 Amo-Chr5 98636463 98640684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3530 30 517 MAP Kinase Kinase Gene Family AT5G40440 77.664 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Amo05g3530 Pkinase 1.3e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3530 K20607 - gmx:100784935 960.288