Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3529 ATGGCTTCATCATCTTCTTCTTCAAGCTACTCAAATTCTCCATGTGCGGCATGCAAGTTTTTGAGAAGAAAATGCTTACCGGATTGCATTTTCGCGCCCTATTTCCCGCCGGAAGAGCCTCAAAAATTCGCAAACGTTCACAAGATCTTCGGCGCAAGCAATGTAAGCAAGCTTCTAAATGAAGTTCAGCCTCATCAAAGGGAAGACGCGGTGAATTCTCTTGCATATGAGGCTGAAGCAAGGATCAAGGATCCAGTTTATGGTTGTGTTGGTGCAATTTCAGTGCTCCAAAGACAAGTTATTAGGCTCCAAAAGGAGCTTGATGCCACAAATGCTGATTTGATGAGATATTGCAATGAAGTTCCTAACCCTACTTTAGGAAGAAGGAATAATCATAATAATAACAACAATAATAATAATTTGGGTGAAGGAGGTGGTGGTTCTTTTTATTTCCCTTCTTCTTCTTCTTCAGCTTGGAACAATGATGATACTTGTGGTGGTGGGGATGGTTACCATAGAGGTTGA 525 0.4133 MASSSSSSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLMRYCNEVPNPTLGRRNNHNNNNNNNNLGEGGGGSFYFPSSSSSAWNNDDTCGGGDGYHRG* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3529 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 7 163 - -
Amo05g3529 174 Coils Coil 93 120 - -
Amo05g3529 174 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Amo05g3529 174 MobiDBLite consensus disorder prediction 124 147 - -
Amo05g3529 174 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Amo05g3529 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3529 Amo-Chr5 98601006 98602332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3529 8 117 AS2 family AT3G27650 86.364 1.76e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo05g3529 LOB 2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3529 - - gmx:100306630 243.432