Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g3506 | ATGAATGTGTCAAACGGGGATAGAGTGCTGATATGGGACTTTTCTAACAAAACAGTGACTACAACAACAACTACAGCATATATAAAGGTAATAATTAAAAATCAGAATAAGCTGAAGAAATGGTCACAAATTGCAAAATTACTTGGTGGCAGGAATGGGAAGCAGTGTAGAGAGAGATGGCACAACCATCTCCAGCCAAATCTTAAGAAAGGGCCATGGACTTGGAAAGAAGACATGATTCTGATCAAAGCCCACAAGGAAGCTGGTGGAAACAAATGGGCTGAGATTTCAAAGAGATTGCCAGGTAGGACTGATAACTCCATCAAGAATCGTTGGAATACAATTAAGAGGAGTAGGCCCACAAAAAAGTTCAAGTTCATTAAGCCCAATAACAACAATAATTTTGATGGGTCAAAAATGCTCAAAGCCTATATCGATGCAGTGGCTGCAGCCCAAGCAGAAGTAGCAACTTCATCAAAGTCAAAGTCAAAGAATGATTCCAACAAGAATAAGGGCAAGGCCAGGGTTAAAATTGATCTCAATTCTATTCCCTTGGAGTTTCCAAATGATGACGTCATCAACATTCATGGAAGTGATGTTGGTGGTGAATATGGCAACTGGGTTTAG | 627 | 0.3987 | MNVSNGDRVLIWDFSNKTVTTTTTTAYIKVIIKNQNKLKKWSQIAKLLGGRNGKQCRERWHNHLQPNLKKGPWTWKEDMILIKAHKEAGGNKWAEISKRLPGRTDNSIKNRWNTIKRSRPTKKFKFIKPNNNNNFDGSKMLKAYIDAVAAAQAEVATSSKSKSKNDSNKNKGKARVKIDLNSIPLEFPNDDVINIHGSDVGGEYGNWV* | 209 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g3506 | 208 | MobiDBLite | consensus disorder prediction | 155 | 175 | - | - | |
Amo05g3506 | 208 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 39 | 64 | IPR017930 | - | |
Amo05g3506 | 208 | CDD | SANT | 39 | 64 | IPR001005 | - | |
Amo05g3506 | 208 | PANTHER | TRANSCRIPTION FACTOR MYB98 | 34 | 163 | - | - | |
Amo05g3506 | 208 | ProSiteProfiles | Myb-like domain profile. | 40 | 64 | IPR001005 | - | |
Amo05g3506 | 208 | Pfam | Myb-like DNA-binding domain | 39 | 64 | IPR001005 | - | |
Amo05g3506 | 208 | Pfam | Myb-like DNA-binding domain | 70 | 115 | IPR001005 | - | |
Amo05g3506 | 208 | SMART | sant | 69 | 118 | IPR001005 | - | |
Amo05g3506 | 208 | SMART | sant | 15 | 66 | IPR001005 | - | |
Amo05g3506 | 208 | Gene3D | - | 25 | 69 | - | - | |
Amo05g3506 | 208 | PANTHER | MYB PROTEIN-RELATED | 34 | 163 | - | - | |
Amo05g3506 | 208 | ProSiteProfiles | Myb-like domain profile. | 65 | 116 | IPR001005 | - | |
Amo05g3506 | 208 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 65 | 120 | IPR017930 | - | |
Amo05g3506 | 208 | SUPERFAMILY | Homeodomain-like | 44 | 119 | IPR009057 | - | |
Amo05g3506 | 208 | CDD | SANT | 72 | 116 | IPR001005 | - | |
Amo05g3506 | 208 | Gene3D | - | 72 | 134 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g3506 | Amo-Chr5 | 98338433 | 98341401 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g3506 | 29 | 173 | MYB Transcription Factor Family | AT4G18770 | 46.939 | 7.67e-35 | 125 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Amo05g3506 | Myb_DNA-binding | 8.8e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g3506 | - | K09422 | aip:110263065 | 313.153 |