Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3506 ATGAATGTGTCAAACGGGGATAGAGTGCTGATATGGGACTTTTCTAACAAAACAGTGACTACAACAACAACTACAGCATATATAAAGGTAATAATTAAAAATCAGAATAAGCTGAAGAAATGGTCACAAATTGCAAAATTACTTGGTGGCAGGAATGGGAAGCAGTGTAGAGAGAGATGGCACAACCATCTCCAGCCAAATCTTAAGAAAGGGCCATGGACTTGGAAAGAAGACATGATTCTGATCAAAGCCCACAAGGAAGCTGGTGGAAACAAATGGGCTGAGATTTCAAAGAGATTGCCAGGTAGGACTGATAACTCCATCAAGAATCGTTGGAATACAATTAAGAGGAGTAGGCCCACAAAAAAGTTCAAGTTCATTAAGCCCAATAACAACAATAATTTTGATGGGTCAAAAATGCTCAAAGCCTATATCGATGCAGTGGCTGCAGCCCAAGCAGAAGTAGCAACTTCATCAAAGTCAAAGTCAAAGAATGATTCCAACAAGAATAAGGGCAAGGCCAGGGTTAAAATTGATCTCAATTCTATTCCCTTGGAGTTTCCAAATGATGACGTCATCAACATTCATGGAAGTGATGTTGGTGGTGAATATGGCAACTGGGTTTAG 627 0.3987 MNVSNGDRVLIWDFSNKTVTTTTTTAYIKVIIKNQNKLKKWSQIAKLLGGRNGKQCRERWHNHLQPNLKKGPWTWKEDMILIKAHKEAGGNKWAEISKRLPGRTDNSIKNRWNTIKRSRPTKKFKFIKPNNNNNFDGSKMLKAYIDAVAAAQAEVATSSKSKSKNDSNKNKGKARVKIDLNSIPLEFPNDDVINIHGSDVGGEYGNWV* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3506 208 MobiDBLite consensus disorder prediction 155 175 - -
Amo05g3506 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 64 IPR017930 -
Amo05g3506 208 CDD SANT 39 64 IPR001005 -
Amo05g3506 208 PANTHER TRANSCRIPTION FACTOR MYB98 34 163 - -
Amo05g3506 208 ProSiteProfiles Myb-like domain profile. 40 64 IPR001005 -
Amo05g3506 208 Pfam Myb-like DNA-binding domain 39 64 IPR001005 -
Amo05g3506 208 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Amo05g3506 208 SMART sant 69 118 IPR001005 -
Amo05g3506 208 SMART sant 15 66 IPR001005 -
Amo05g3506 208 Gene3D - 25 69 - -
Amo05g3506 208 PANTHER MYB PROTEIN-RELATED 34 163 - -
Amo05g3506 208 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
Amo05g3506 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 120 IPR017930 -
Amo05g3506 208 SUPERFAMILY Homeodomain-like 44 119 IPR009057 -
Amo05g3506 208 CDD SANT 72 116 IPR001005 -
Amo05g3506 208 Gene3D - 72 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3506 Amo-Chr5 98338433 98341401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3506 29 173 MYB Transcription Factor Family AT4G18770 46.939 7.67e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g3506 Myb_DNA-binding 8.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3506 - K09422 aip:110263065 313.153