Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3505 GCCTCGTCGACCCGGGAAACCCGCAATCCGGACCCGAATCCGATTACATATTCGTACATACTACATAGAAGTTGCACGCAGAATCTGAGGCTAGTTCTCGTTTACATCTATCTATACACAGATTTACATTGCCGTTCCCTTGCAATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACTTTACCAAAACCATGGCGCGGTCTTGTGGATGGAAAGACTGGGTATCTTTATTTTTGGAATCCTGAAACTAATGTTACCCAATATGAGCGGCCTTCGAGCTCATCTGCCCCACCTAAGTATTCTTCTTCGGTGTCTAGTTCCTCTGTCCAGGTTCAACAGTCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGGGTGATAGGTATGATAGGAACAGTGGAGGTGGGTCAAACAATGAAGGTGGATTGCGCAACTACCAGGAGTCGAAAGGTGGAAATTTTAGTTCTCATAATGCTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTATCAAAGGTCAAGGAGCACCAGATACTGGAGTTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACAGTTACTGGTGATGATGTTCCTCCACCACTTACGTCATTCGGTTCAAGTGGCCTTCCCTCTGAGATTCTTAGAGAGGAGGATAAACAAGATCCCTTAGGTGCGATATTTGCTCCTGGGGAGGAGCTAATGTCGTACGCTGTGGTGCCCTCTTTTTGTGGGCTAGCATTTTATTTGGAGCGCCCTTTACGGTGGACCAAGTTTTTGCAAGGGCTTTCCGAATCATCCAAGTTCGTGGCTGGGACTGCCGTTGGTCATGATTCAGTCTGCCACTTGGTCTGTACGGAAGAAGAGGCCTCCTCCTGCGCTAGCTTGCATCAGCAAGCATTGGTACAAAATGCTGGGTTCTCTGCCCCGACTCCAATTCAGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCAATTGCTAAAACAGGTTCAGGGAAGACTCTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGATCCAAGAATGGGCCCCACAGCATTGGTACTATCACCAACAAGGGAACTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCGTCAAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGGGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATTCTTGAGATGAGGAGAATTACTCTTAACCAGATTTCTTATCTAGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAGCCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGACCTGCTGGTCAATCCCGTTCAGGTGAACATCGGGAATGTAGATGAGCTTGTTGCTAACAAATCTATTACTCAGCATGTTGAAGTATTGACCTACATGGAGAAACAGAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTGCACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGGACTGGGAGGTCTCCTGTCCTTGTTGCTACGGATGTTGCAGCTCGAGGATTGGACATTAAAGACATCAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGAGCTGGGGCCACTGGTTTGGCATACACTTTCTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTTCCTCCTGAACTTCGGGATATGTCAGGACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGCCGCGGGGGACGCGGTGACTCTGGATTTGGTGGAAGGAATAATGATTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATACAGTGGAAGGGGTAGTAGTGATGCTGGATATGGTAGCAGAGTTGGCGACTCTAGTTATGGAGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGTCGTGGGTCAGACTATGATTCACAGAGGAATGATCGGGCTCGGAGTCCTGACAGGGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGCCGTAGCCGTAGCCCTGTCAGGGTCCCACCAAATTCCAATGTCAGCTTTCACAAAGCAATGATGGAACGTGGTGGAGGTGATAGTGATCGCAAGGGTTTTAATCGGGACCGAAGCCGCAGTCCTGTCCCCTACAGCAAGGACCGGGCTCCCACTGGTCGCGAACGTTCCCCCCCTTACAGTTTTCATCGCTCTGTTATGGGACAAGGTCGATCATCCTCCCCATATCGACAGCAGCATGCAGAGGAAAAAGTATTAAGACGCAGTCCTAATCGAAGTTCACCATCCTCTCCTGGTGGTGGTAGATCGAACAATGGTACTCAAAAGGAGTGGGGAGGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGCATGATACCTGATGAAGAAGGCATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAG 2829 0.4829 ASSTRETRNPDPNPITYSYILHRSCTQNLRLVLVYIYLYTDLHCRSLAMAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSAPPKYSSSVSSSSVQVQQSSQGQQRGRSPELGDRYDRNSGGGSNNEGGLRNYQESKGGNFSSHNAPNGMHSAGNVSSSIKGQGAPDTGVGLSPEAYRRRHEITVTGDDVPPPLTSFGSSGLPSEILREEDKQDPLGAIFAPGEELMSYAVVPSFCGLAFYLERPLRWTKFLQGLSESSKFVAGTAVGHDSVCHLVCTEEEASSCASLHQQALVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGEQDAKHATDLIKVLEGANQRVPPELRDMSGRGGGMNRSRRWGSSGSGRGGRGDSGFGGRNNDSGYGGRGSDSGYSGRGSSDAGYGSRVGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRVPPNSNVSFHKAMMERGGGDSDRKGFNRDRSRSPVPYSKDRAPTGRERSPPYSFHRSVMGQGRSSSPYRQQHAEEKVLRRSPNRSSPSSPGGGRSNNGTQKEWGGSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3505 942 MobiDBLite consensus disorder prediction 95 130 - -
Amo05g3505 942 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 452 460 IPR000629 -
Amo05g3505 942 MobiDBLite consensus disorder prediction 880 901 - -
Amo05g3505 942 CDD SF2_C_DEAD 520 649 - -
Amo05g3505 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 656 IPR027417 -
Amo05g3505 942 SMART ww_5 68 101 IPR001202 GO:0005515
Amo05g3505 942 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 175 772 - -
Amo05g3505 942 ProSiteProfiles WW/rsp5/WWP domain profile. 67 101 IPR001202 GO:0005515
Amo05g3505 942 SMART ultradead3 320 523 IPR014001 -
Amo05g3505 942 Pfam Helicase conserved C-terminal domain 532 640 IPR001650 -
Amo05g3505 942 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 679 IPR001650 -
Amo05g3505 942 MobiDBLite consensus disorder prediction 715 729 - -
Amo05g3505 942 MobiDBLite consensus disorder prediction 813 844 - -
Amo05g3505 942 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 506 IPR014001 -
Amo05g3505 942 Gene3D - 511 681 IPR027417 -
Amo05g3505 942 MobiDBLite consensus disorder prediction 761 794 - -
Amo05g3505 942 Pfam DEAD/DEAH box helicase 325 495 IPR011545 GO:0003676|GO:0005524
Amo05g3505 942 CDD WW 70 99 IPR001202 GO:0005515
Amo05g3505 942 Gene3D - 65 118 - -
Amo05g3505 942 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 175 772 - -
Amo05g3505 942 SUPERFAMILY WW domain 61 100 IPR036020 GO:0005515
Amo05g3505 942 ProSitePatterns WW/rsp5/WWP domain signature. 73 99 IPR001202 GO:0005515
Amo05g3505 942 Gene3D - 195 510 IPR027417 -
Amo05g3505 942 MobiDBLite consensus disorder prediction 95 195 - -
Amo05g3505 942 MobiDBLite consensus disorder prediction 141 186 - -
Amo05g3505 942 MobiDBLite consensus disorder prediction 671 942 - -
Amo05g3505 942 SMART helicmild6 560 640 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3505 Amo-Chr5 98325100 98330236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3505 316 678 Eukaryotic Initiation Factors Gene Family AT3G19760 33.243 4.84e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3505 K12823 - gmx:100816455 816.609