Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3498 ATGGACAAAAAACCGTGCAACTCATCTCAAGACCCTGAAGTGAGAAAGGGACCTTGGACAGTGGAAGAAGATTTGATTTTGATCAACTATATTGCAAATCATGGAGAAGGTGTTTGGAACTCCTTAGCCAAAGCCGCTGGTCTTAAACGCACTGGAAAGAGTTGTAGACTCAGGTGGCTAAACTACCTTCGCCCTGATGTTAGAAGAGGAAATATCACACCTGAGGAACAACTTTTGATCATGGAGCTTCATGCAAAATGGGGAAACAGGTGGTCCAAGATAGCAAAACATCTACCTGGGAGAACTGACAATGAGATTAAGAATTTCTGGAGGACAAGGATCCAGAAGCATATCAAGCAAGCTGAGAACTTTCAATCACAACAAAGTAATTCTGATCATGATCATCAGATCAATGATAATAATTACCATCATCATCATCATCATAATAGTTATGCAAGCACTTCTAGCCATGTTTCAAACATGGCTGAGGCAATGGAGATTTCATATTCTTCTCCACCCACATACCAAGGAACTACATTGGAGCCATTCACAACTCATCACAATCATCAACAACAACAACAACATCATCATCATCATCAATACCCTTCAACAATCCCTACTACTGACCAATCTAGTTGTTGTACCAATGACAACAACAACAACTATTGGAGCATGGAGGATCTCTGGTCCATGCAATTACTCAATGGGGATTAA 714 0.4048 MDKKPCNSSQDPEVRKGPWTVEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQSQQSNSDHDHQINDNNYHHHHHHNSYASTSSHVSNMAEAMEISYSSPPTYQGTTLEPFTTHHNHQQQQQHHHHHQYPSTIPTTDQSSCCTNDNNNNYWSMEDLWSMQLLNGD* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3498 237 Gene3D - 16 68 - -
Amo05g3498 237 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 234 - -
Amo05g3498 237 SMART sant 15 65 IPR001005 -
Amo05g3498 237 SMART sant 68 116 IPR001005 -
Amo05g3498 237 MobiDBLite consensus disorder prediction 122 154 - -
Amo05g3498 237 MobiDBLite consensus disorder prediction 176 212 - -
Amo05g3498 237 CDD SANT 73 112 IPR001005 -
Amo05g3498 237 MobiDBLite consensus disorder prediction 197 212 - -
Amo05g3498 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Amo05g3498 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Amo05g3498 237 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Amo05g3498 237 Gene3D - 73 147 - -
Amo05g3498 237 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Amo05g3498 237 CDD SANT 18 63 IPR001005 -
Amo05g3498 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 234 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo05g3498 237 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Amo05g3498 237 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Amo05g3498 237 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3498 Amo-Chr5 98223494 98227350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3498 4 237 MYB Transcription Factor Family AT3G01530 52.743 1.64e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g3498 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3498 K09422 - gmx:778046 328.561