Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3479 ATGGAGCATATATCAGAAAAACGATTTCCTCTTAATGCCAAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGTGTTAGTGCCTCAGTATACAGGGCTCTCTGCATTCCACTCAATGAAATAGTTGCCATCAAGGTTCTTGATCTCGAGAAGTGCAACAATGATTTGGATGGAATTAGGAGGGAGGTACAGACCATGAGCTTGATTGACCATCCGAATCTTCTACGAGCACATTGCTCTTTTACTGCTGGACACAATCTTTGGGTTGTGATGCCGTACATGGCTGGGGGTTCTTGCCTTCATATAATGAAATCTGCCTTTCCCGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTACTTCGTGAAGTTCTCAAAGCACTAGTCTATCTTCATGACCATGGTCACATACACAGAGATGTTAAGGCTGGGAATATTTTGATTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGATAGGCAACGATCAAGAAATACTTTTGTTGGAACACCCTGCTGGATGGCTCCTGAGGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGCATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCAATGAAAGTTTTGCTTATGACTTTGCAAAATGCCCCCCCTGGTCTTGATTATGAAAGAGATAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTGAAAGACCCTAAGAAACGTCCAAGTTCAGATAAGCTTTTAAAGCACCACTTCTTCAAACATGCACGCCCTGTTGACTATCTTGCTCGCACAATTTTAGATGGCCTTGCTCCATTGGGAGACCGCTTTAGAATGTTGAAGGCAAAAGAGGCAGATTTACTGGTTCAGAACAAGGCTCTTTATGAAGATAAGGAGCAATTGTCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTAAAAAGTCAAGCTGCTCTCATTCAAGATGATGGAGTGCCAAATGCAGAAGATCCAGATATAGACAAGAAGCAAAAAGATAGATCTGATGACGAAAGGGTCCCAGCAGATGGTCTATCTTCTGTATCAGCTAATCATTCAGATGTTGCACCCACACTGGACAAAGAGGATGGCTTTAACAATCTTCAGGATTTGGAGAGTTCACTTCCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGTTGCTTTGATGTCGGTGAGGAAGATGTCAATAATACCAGTCCAAGAGATTTGGATACTGATTATGGAAGAAGTAACAACGAATCTTCTGGGCCAAGTGGTTCATTACCGCAAAATGCTATAGCTCAACAAAAAAAGTTTTTGAGTGGTTCTTTGTTGCCTGATAATTATCCTTCTTCCAAAAAGGTTTTCGATGGTGACAGGGATTATCTACAAACAAGGTATTCTTCTGAGCGGAATCATAGCGGTCCATTGTTATATCGGCAGAAGAGGGATAACACCAACCTTCCTCTGGTTGATGACACATCAGAAGGAGCTGTTGTTCAGCGTAAGGGGCGCTTTAAGGTCACATCAGCAGATCTCAGTCCAATGGGTCAGCCAAACTGCATTTGTGTCCCAGTTAGTGGAGCTCCTGCTAGTCCGCCAAATCAGAACTCCGTGGCTGCTGCTATTCTTCCATCATTGCAGTGCATATTACAACAGAACAGTTTGCAGAGGGAAGAACTTATTAAACTAATAAAGTATGCAGAGCAATCTTATGGCAAGAATGCAGAATCAGCGGAGGCAGTTGATTCTTTGCAGGCACCACCGGTGACAAATAGGGAGCGAGAGCTGTATTTTCAGGTTGTTCAACTCCAACAGAGTCTTGGCACCCTTGTTGAGGAATTGCAGAGACAAAAGATGAAAAATCTTCAGTTAGAGAAACAGTTGAGCTCAATGGCCAACAAAGTTGAAAAGTGA 2013 0.4183 MEHISEKRFPLNAKDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAHCSFTAGHNLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATLLREVLKALVYLHDHGHIHRDVKAGNILIDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSDKLLKHHFFKHARPVDYLARTILDGLAPLGDRFRMLKAKEADLLVQNKALYEDKEQLSQKEYIRGISAWNFNLEDLKSQAALIQDDGVPNAEDPDIDKKQKDRSDDERVPADGLSSVSANHSDVAPTLDKEDGFNNLQDLESSLPSFPSKPLQALKGCFDVGEEDVNNTSPRDLDTDYGRSNNESSGPSGSLPQNAIAQQKKFLSGSLLPDNYPSSKKVFDGDRDYLQTRYSSERNHSGPLLYRQKRDNTNLPLVDDTSEGAVVQRKGRFKVTSADLSPMGQPNCICVPVSGAPASPPNQNSVAAAILPSLQCILQQNSLQREELIKLIKYAEQSYGKNAESAEAVDSLQAPPVTNRERELYFQVVQLQQSLGTLVEELQRQKMKNLQLEKQLSSMANKVEK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3479 670 MobiDBLite consensus disorder prediction 359 378 - -
Amo05g3479 670 Coils Coil 640 667 - -
Amo05g3479 670 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 667 - -
Amo05g3479 670 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 667 - -
Amo05g3479 670 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3479 670 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3479 670 Gene3D Transferase(Phosphotransferase) domain 1 97 293 - -
Amo05g3479 670 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Amo05g3479 670 SUPERFAMILY Protein kinase-like (PK-like) 13 306 IPR011009 -
Amo05g3479 670 MobiDBLite consensus disorder prediction 440 462 - -
Amo05g3479 670 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3479 670 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Amo05g3479 670 CDD STKc_OSR1_SPAK 14 277 - -
Amo05g3479 670 MobiDBLite consensus disorder prediction 431 462 - -
Amo05g3479 670 MobiDBLite consensus disorder prediction 352 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3479 Amo-Chr5 97858456 97865695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3479 1 667 MAP Kinase Kinase Kinase Kinase AT5G14720 66.958 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Amo05g3479 Pkinase 5.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3479 K08835 - gmx:100778837 1115.91