Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3478 ATGGGTGTGGTGCGGTCGTGGGAGAGTAGGCAGGCGGAGCTAGAGTCCTTCTGTCGAAGACTGGTGGCCGATACGACCACCATTCATCGGCGAAAGGACCTAGAGCCGCAGCCGAAAAACAACCTCTTTGGAGATTATGATGAAGAAGAAGAGAGGAATACCCTAGTTTGTGTGACAAGTGGTGTTTCTTATTTGGGACTTGCTTTGGTCAACAAGCTTTTGCAAAAAGGTTACTCAGTGAGAATCACTATTGAAAATCCAGAGGACATAGAAAAAGTGAGGGAAATGAAGGAAAGTAGAGAAGGAAATGGAAAATTGGAAGTAGTAATGGGAAAGTTAAGTGATGTTGATAGCTTATTAAATGCATTTGAAGGTTGCCATGGCGTTTTTCACACCTCTGCTTTTACCGATCCTGCTGGTCTCTCTGGCTACACTAAATCTATGGCTGAGATTGAAGCGAGGGTGAGTGAGAATGTGATGGAAGCATGTGCAAGAACAACAACTATTAAAAGATGTGTCTTCACATCATCACTCTTAGCTTGTGTGTGGCAACAACAAAATCCAGAGTCACAAGATGCTCCAATTACTATTAACCATACCTCATGGACAAATGAATCACTATGCAAAGAAAAGAAGTTATGGTATGCATTGGGAAAAGTGAGAGCTGAGAAGGCTGCATGGAGAATAGCAAACGAAAGGGGTTTGAAGCTCACTACCATATGTCCAGCACTCATCACAGGCCCTGATTTTTGTCGCAGTAATCCAACATCTACTATTGCATATCTTAAAGGTGCCCAAGAAATGTATTGTCATGGTTTGATAGCAACAGTTGACGTAACAAAATTGGCTGAAGCTCATGCAAGTGTGTTCAAGGCAATGAATAGCACTGCTTCTGGCAGATACATTTGTTTTGATAAATTAATTGATAACCAAACTGAGGCAGAAATTTTGGCCAAAGAAATTGGGATGCCCAAACATAAGATTTGTGGGGATTCATCATCTATCAATTGTTCCTCATTGCATAGATTTATGAAAATCTCAAATGACAAGTTAAACAGACTCATGTCAGGTCCAATTAGGTGTTACAATCAACATTATTGTTAG 1104 0.4085 MGVVRSWESRQAELESFCRRLVADTTTIHRRKDLEPQPKNNLFGDYDEEEERNTLVCVTSGVSYLGLALVNKLLQKGYSVRITIENPEDIEKVREMKESREGNGKLEVVMGKLSDVDSLLNAFEGCHGVFHTSAFTDPAGLSGYTKSMAEIEARVSENVMEACARTTTIKRCVFTSSLLACVWQQQNPESQDAPITINHTSWTNESLCKEKKLWYALGKVRAEKAAWRIANERGLKLTTICPALITGPDFCRSNPTSTIAYLKGAQEMYCHGLIATVDVTKLAEAHASVFKAMNSTASGRYICFDKLIDNQTEAEILAKEIGMPKHKICGDSSSINCSSLHRFMKISNDKLNRLMSGPIRCYNQHYC* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3478 367 CDD FR_SDR_e 56 355 - -
Amo05g3478 367 Gene3D - 46 361 - -
Amo05g3478 367 PANTHER CINNAMOYL COA REDUCTASE-LIKE PROTEIN 43 364 - -
Amo05g3478 367 Pfam NAD(P)H-binding 65 246 IPR016040 -
Amo05g3478 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 331 IPR036291 -
Amo05g3478 367 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 43 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3478 Amo-Chr5 97818776 97825376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3478 55 317 Miscellaneous Gene Families AT5G19440 31.086 3.26e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3478 - - aip:107644520 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4959 13 148616073 148617665 Amo05g3478 05 97818776 97825376 PCT