Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3431 ATGCATACGATGAAAAAGAATTCTGACCTGAGTGAGATTGGATCTGTATTCAACAACTTGGCTAAGCAGCTTGAGGAACCTGTTGACTTTGAGCTTCCAGATTCGTTTACCAAGAATAAACCTGTGCAGTATAGATCCATAAAGCGCAATATATATACTTCAAAGAAGTTTAAGAGACGGTTTGATGATGGCATATTCTGTTCTTGTACTCCTTCACCTGAATCTCCGAATGTGTGTGGTATTGATTGCCACTGTGGGGTGCTTTTATCTTGCTGTTCTTCAGCCTGTAAATGTGGGAGCTCCTGTCTCAACAAACCATTTCAGCATCGTCGGGTGAAAAAGATGAAATTAGTTCAGACTGAGAAATGTGGCTCTGGTATTGTAGCTGCTGAAGATATTAAGCTTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTAATTGATGACAAAACATGTGAAGAAAGACTTTGGAACATGAAGTATCGTGGGGATTCAAACTTTTACTTATGTGAAATCAATCGAGATACTGTGATTGATGCCACATATAAGGGAAACAAATCTAGATATATCAATCATAGTTGCTGTCCCAATACAGAGATGCAGAAATGGATAGCAGATGGTGAAACCAGAATAGCCATTTTTGCTACACGAGACATTCAAAAGGGTGAACAACTCACCTACGATTACCGGTTTGTCCAATTTGGCGCAGACCAAGAATGTCACTGCGGTGCTGTTGCCTGCAGGCGTAAGCTTGGTGTCCAACCTACAAAGCCTAAAATGTCAGTTAAATGTCAGGTATATCAGAATGGAGGTTTGCAAATTGGCAGTTCTCAAGTTTTTGCGCAATCTAAAAGCTTAAAAGTTTGCATTGGGGAAGTTATTAGGATAAAACACCTTGAACATGTGAGGTTTGGGCTTATTAAATGGTTTAACAAATATTCCCGAAAACACTTGATCCTGTTTGAAGATGGCTGTGTTGAAATTTTTGACATGTCTAAAGAAGATTGGGAACTCACTAGTTTGTGGTGCAATTACTTTTGA 1041 0.3919 MHTMKKNSDLSEIGSVFNNLAKQLEEPVDFELPDSFTKNKPVQYRSIKRNIYTSKKFKRRFDDGIFCSCTPSPESPNVCGIDCHCGVLLSCCSSACKCGSSCLNKPFQHRRVKKMKLVQTEKCGSGIVAAEDIKLGEFVIEYVGEVIDDKTCEERLWNMKYRGDSNFYLCEINRDTVIDATYKGNKSRYINHSCCPNTEMQKWIADGETRIAIFATRDIQKGEQLTYDYRFVQFGADQECHCGAVACRRKLGVQPTKPKMSVKCQVYQNGGLQIGSSQVFAQSKSLKVCIGEVIRIKHLEHVRFGLIKWFNKYSRKHLILFEDGCVEIFDMSKEDWELTSLWCNYF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3431 346 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 8 283 IPR025787 -
Amo05g3431 346 CDD SET_ASHR3-like 114 252 - -
Amo05g3431 346 ProSiteProfiles AWS domain profile. 62 111 IPR006560 GO:0005634|GO:0018024
Amo05g3431 346 SMART set_7 113 236 IPR001214 GO:0005515
Amo05g3431 346 ProSiteProfiles Post-SET domain profile. 236 252 IPR003616 -
Amo05g3431 346 Pfam SET domain 124 229 IPR001214 GO:0005515
Amo05g3431 346 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 13 263 - -
Amo05g3431 346 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 267 338 - -
Amo05g3431 346 SMART PostSET_3 236 252 IPR003616 -
Amo05g3431 346 PANTHER SET DOMAIN PROTEINS 267 338 - -
Amo05g3431 346 PANTHER SET DOMAIN PROTEINS 13 263 - -
Amo05g3431 346 ProSiteProfiles SET domain profile. 113 230 IPR001214 GO:0005515
Amo05g3431 346 SUPERFAMILY SET domain 26 242 IPR046341 -
Amo05g3431 346 Gene3D SET domain 20 269 IPR046341 -
Amo05g3431 346 SMART shorttest3 62 112 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3431 Amo-Chr5 96997117 97004044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3431 92 251 C2H2 Transcription Factor Family AT2G23740 35.556 1.16e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo05g3431 SET 2.2e-20 No_clan