Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3394 ATGGATTTGAGCTCTAAATCCTACAAATGGAAGTATGATGTATTCTTGAGCTTTAGAGGGGATGATACACGTAGGAGTTTCACAAGCCATCTTTATCATTCTCTTTGCCAAAAGGGTGTCAATACTTTCATAGACTACAAGGATCTCATAAAGGGAGAGCAGATAACACCTTCACTTCTTAGGGCTATTGAAGCCTCAAGGATCTCAGTCCTTGTATTATCTGAAAACTATGCATCTTCCACTTCTTGCTTGGATGAACTCCTTAAGATCATTGAGTGCAAGGACACTAAGGGTCAGCTGGTTTTGCCGGTCTTTTATGGTGTGAATCCATCTCAAGTAAGAGAACAGAAGGGAAGTTTTGCAGAAGATTTGGCCAAACATGAAGACAAGTTCAGGGATGATGTCAACAAAGTAAAAAGGTGGAGGGCAGCACTATGTGAGGCTTCTACTTTGTCTGGGTGGCACATGGGTGACGGGCAAGAATCAAAATTTGTCCAGAGAATTGTTGAGGAGATATTGAGTAAGTTGAACCGCACACCTTTCAATGTTGCTAAGCATCCTGTTGGATTGGATTCACCTATTGAAGATATAAAAACACTTTTAGATACTGGATCAGATGATGTACAGGCTATAGGAATTTATGGAATTGGAGGTATAGGGAAAACAACACTTGCTAAGGCTGTTTATAACCATATTGCTAACCAGTTTGAGGGTAGTGCATTCATTGCAAATGTTAGAGAAATTTCAAGTCAAAGATCTGGGTTAGTTCAACTACAAGAAGCTCTTCTTTCTGAGATTTTGAACCATAGATATTGTAAAGTAGGAAACAAAGACAGAGGCATTAATATGATAAAGAATAGGCTTTGCAGCAAAAAAGTTCTCATAGTTGTTGATGATGCTGATTCGTTGGAGCAACTGGAATCATTGATTGGAGAATATAGTTGGTTTGGTTCTGGAAGTAGAATCATCATAACAACTAGAGATGAGCATTTGCTAGTTGCTCACAATGTGGAAACAAATCAACAAAAGATTTCCAAACAAACGATTTTTGAAATACTTAAAATCAGCTTTCATGGATTGGAAGAGAATGAAAAGGCTATTTTTCTTGATATTGCATGTTTCTTTAAGGGAGAGGACAGACAATATGTGAAAATGATATTAGATGGTTGTGACCTACATTCGGATAATGGTTTCGGAGTTCTATTGGAGAAGTCTCTAATTACAATAGAAGTTAATAAGATTTGGATGCATGATTTGCTACAGGAAATGGCTAAAGAAATTGTGCGACTTGAATCCCCTAGTGATCCTGGTAAACGTAGCAGATTATGGTTTAATGAGGATGTTCTTCATGTATTAAAACACTATAAGGGAAGTAACAACATTGAAGGCATAAAGCTAGACATACCGGAATCAGAGACAGAGTACATAGAGGCCAAGGCCTTGTCAAGGATGAATAGACTTAGAATTCTTATTATCAACAATGTGCATGTTACAGATGATATCCAGTATCTACCTGATGAGCTAAGATTGATTGATTGGCCAAGATACCCCTCTTCAACTCTACTACCAAATTTCCATCCAAGGAGGCTTGTCTATCTAAATATGAGTCATAGTCGCATCAAGCACTTGTGGAATGGAGTTAAGATATTCAGAGACTTGAAACTTGTGTCTTTTAGCAGCTGTGAACACCTTAAAGAAATTCCAGACTTCTCAATGGTTCCAAACCTAGAAAGCCTAAGCCTAGACAACTGTAGAAGTTTAATTAAGGTGCATGAGTCTGTGGGAACTCTTGATAAGCTTGTTACTTTAAACCTTCTATTTTGCTCCAATCTCAAGATGTTTCCAAGTCGTTTCATGCTAAAATCACTCCATACTCTCCTCCTCACTGGCTGCTCAAAACTAAAAAAGTTTCCGGAGATTGTGGGGAACATGGAACATCTTGAAGAAATCCTTCTCCAAGGAACAGCAATAAAAGAACTACCTCAGTCAATTGAATATCTAAGTGGGCTGAAGTCCTTATTCTTAGAGTCTTGCCAAAGTCTTGAGCATCTCCCCAGTAGCCTTCAGAAGTTGCAAAACCTTACTATTCTTGATCTAAGTGGCTGCTCTAAGCTTCAAAAGATTCCAAAGCTTCCCCTAAATACAAGATATATAGACTTGAGTAATTGTAGATCTTTGACAAGCTTTCCAACATTATCCAGCATATCAAATTTTATTGCAGAGGATTTTCCAAGGTTTTATCAAATTAGATTTGTTAACTGCCATAAACTGGATATGATGCTTCCAGAATATATTTCTTGTGAAGTTGTACTTCCAGGGAGCAAGATCCCAGATTGGTTCCAATACCAGAGTACTAATAATTCCATTTATCTTGAGGTGTCTTCAGGTTTATATGGTAAGCCCATGGAGGTGTTTTTTGGCGCAGTTTTTGAGTTGGATAAAGGTGTTACTACAACTGGCCTGTTCGCAGGTAAATTTGATGTTATTGTCAATGATATAAAGATAAATATGTCTACAAGCTATTTTGAGGCACTGGACTCAAGTCATGTGTGGTTGAGTCGGTTGAAACTTGATCATTTTATGTGGCACCTTAAAAGTATGCGTCAATGGAATCACTTTCAGATTTCATTTTCAATCTTTGAAACATCATCAAAGGAGAAGATAGGAGCAACCTTAAAGAGTTGTGGTTTCCATGTTTGGTCCAATCAAGAAGGGTATGGGATTGATCATACAACAGTTAGGAAGTCTACAGGTTGGCTGTCAGATACAGATTCTATAGTTACTGTAATCTCGGCATTAGCATTATTAGATGCAGTTGTGGATTCTGTCACTGCCGAAGACGAAGAATTTGGGTGA 2856 0.3796 MDLSSKSYKWKYDVFLSFRGDDTRRSFTSHLYHSLCQKGVNTFIDYKDLIKGEQITPSLLRAIEASRISVLVLSENYASSTSCLDELLKIIECKDTKGQLVLPVFYGVNPSQVREQKGSFAEDLAKHEDKFRDDVNKVKRWRAALCEASTLSGWHMGDGQESKFVQRIVEEILSKLNRTPFNVAKHPVGLDSPIEDIKTLLDTGSDDVQAIGIYGIGGIGKTTLAKAVYNHIANQFEGSAFIANVREISSQRSGLVQLQEALLSEILNHRYCKVGNKDRGINMIKNRLCSKKVLIVVDDADSLEQLESLIGEYSWFGSGSRIIITTRDEHLLVAHNVETNQQKISKQTIFEILKISFHGLEENEKAIFLDIACFFKGEDRQYVKMILDGCDLHSDNGFGVLLEKSLITIEVNKIWMHDLLQEMAKEIVRLESPSDPGKRSRLWFNEDVLHVLKHYKGSNNIEGIKLDIPESETEYIEAKALSRMNRLRILIINNVHVTDDIQYLPDELRLIDWPRYPSSTLLPNFHPRRLVYLNMSHSRIKHLWNGVKIFRDLKLVSFSSCEHLKEIPDFSMVPNLESLSLDNCRSLIKVHESVGTLDKLVTLNLLFCSNLKMFPSRFMLKSLHTLLLTGCSKLKKFPEIVGNMEHLEEILLQGTAIKELPQSIEYLSGLKSLFLESCQSLEHLPSSLQKLQNLTILDLSGCSKLQKIPKLPLNTRYIDLSNCRSLTSFPTLSSISNFIAEDFPRFYQIRFVNCHKLDMMLPEYISCEVVLPGSKIPDWFQYQSTNNSIYLEVSSGLYGKPMEVFFGAVFELDKGVTTTGLFAGKFDVIVNDIKINMSTSYFEALDSSHVWLSRLKLDHFMWHLKSMRQWNHFQISFSIFETSSKEKIGATLKSCGFHVWSNQEGYGIDHTTVRKSTGWLSDTDSIVTVISALALLDAVVDSVTAEDEEFG* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3394 951 PRINTS Disease resistance protein signature 210 225 - -
Amo05g3394 951 PRINTS Disease resistance protein signature 287 301 - -
Amo05g3394 951 PRINTS Disease resistance protein signature 689 705 - -
Amo05g3394 951 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 340 - -
Amo05g3394 951 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 343 629 - -
Amo05g3394 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 371 IPR027417 -
Amo05g3394 951 Gene3D Ribonuclease Inhibitor 453 618 IPR032675 -
Amo05g3394 951 Gene3D - 8 174 IPR035897 -
Amo05g3394 951 Gene3D Ribonuclease Inhibitor 619 769 IPR032675 -
Amo05g3394 951 SMART AAA_5 207 348 IPR003593 -
Amo05g3394 951 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Amo05g3394 951 Pfam NB-ARC domain 193 343 IPR002182 GO:0043531
Amo05g3394 951 Pfam C-JID domain 771 900 IPR045344 -
Amo05g3394 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 340 IPR044974 GO:0006952
Amo05g3394 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 343 629 IPR044974 GO:0006952
Amo05g3394 951 Gene3D - 175 345 IPR027417 -
Amo05g3394 951 SMART till_3 11 151 IPR000157 GO:0007165
Amo05g3394 951 SUPERFAMILY "Winged helix" DNA-binding domain 348 453 IPR036390 -
Amo05g3394 951 Pfam TIR domain 11 180 IPR000157 GO:0007165
Amo05g3394 951 SUPERFAMILY L domain-like 439 737 - -
Amo05g3394 951 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3394 Amo-Chr5 96398752 96403312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3394 12 742 WRKY Transcription Factor Family AT4G12020 30.281 6.95e-84 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3394 - - ahf:112749316 1176.39