Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3389 ATGATGCTGTATGGAGGGACTTCATCTTATGGCCGTGGATGGTCCTATGATGTATTCTTGAGTTTCAGGGGTGAAGACACAAGGAGGAGCTTTACAGGCTCACTTTACCACAGTTTGCACAAAAAGGGTATCAATGTTTTCATAGATGATGATAAGCTTAGGAGAGGGGAAGAGATTTCCCCAGCTCTTCTTAGAGCTATTGAAGAGTCAAGGATTTCCATCATTGTGTTCTCTCAAAACTATGCATCTTCCAAATGGTGTCTTGATGAGCTTGTTAAGATTCTTGAGTGCATGAAAACAAGGGGGCAATTGGTTTTTCCGGTTTTCTTCAATGTCGATGCTTCCATGGTGCGTTATCAGAAAGACAGTTTCGGCAGAGCAATGTCTGCCCATGAAGTCAGATACAAGGGTAATGAGGAGAAGTTGCAGAAATGGAAGCAGGCCTTGTTTGAAGCAGCTAATTTGTCTGGTTGGAGCTTTAAAAACGGGTATGAGTATGAGCTTATTGAAAAGATTGCTGAGGAGGTCTCAAAGAAAATCAATCAAACCCCTTTGCACATAGCTGAATACCCTGTTGGACTAGAAACTCGAATATCAGAGGTGAAAACTCTGCTGCAAATTGGACCTGGTGAAGATATTCGTGTGATTGGAATCTATGGACTTGGAGGTATAGGTAAAACAACGATTGCACGAGCTTTGTACAACTTTATTGCAGATCAGTTTGAAGCTGCAAGTTTCCTTGCGGACATAAGAGAAAGTTCAAATCAACGTCAAGGTTTAGTACAACTTCAAGAATCACTTCTGTTTGATATAGTTGGGGACAAGAACATTAAGTTGGGAAATATTTATAAAGGAATTCCTATTATAAAGAAAAGATTATGCTGCAAGAAAGTTCTTTTGATTCTTGATGATGTTGACAAATTGGAGCAGCTACAAGCATTAGCTGGAGGACGAGATTGGTTCGGTTTTGGCAGTGTAATAATTATAACAACAAGAGATAAGCATTTGCTAGCTGCTCATCAGGTTGATAAAACATATGAAGTAAAGAAACTAAATCATGGAGAAGCTTTTGAGCTGTTCATTTGGAATGCTTTCAAAAGAAAAGAACCTGAGGCAGGTTATATGGAGATTTCAAACCGTGTTGTGCTCCATGCCGAGGGGCTTCCGCTGGCACTGAAAGTAATGGGCTCAAATTTGATTGGAAAATCTGTGGATGAGTGGACATCTGCACTAGAAAAATATGAAAAGATTCCTAATAAAGAGGTTCAAAATGTACTTAGAGTAACCTATGATAATCTTGAGGAGAATGAGAAAGAAATTTTTCTGGATATAGCATGTTTCTTCAAAGGGGAGACAATGGAATATGTTGAAAAGACACTAAAAGCATGTGGTTTCCATCCGAAATTCGGTATTGGTGTACTTATTGATAGATCTTTAGTAAGTATTGATGAGTACAACAGATTGAGAATGCATGATCTGATTCAAGACATGGGTAGAGAGATTGCAAGAGAAGATTCGCCTTTGGAGCCCGGTAAGCGAAGTAGAATATGGTATCATGAAGATGTTATTGAAGTACTTACTGAAAGCACGGGGACTTACAAAATTCAAGGCATGATGGTGGACCTTCCAGATCAATACATGGTACACTTGAAGAATGATTCCTTCAAAAAAATGAAAAATCTTAAAATTCTCATAGTTCGAAATGGACAATTTTTTGGAAGCCCTCAAGATCTTCCAAACAATTTAAGGCTGCTTGATTGGATGGAGTATCCTTCATCATCTTTCCCATCTAGTTTCCTTCCAAAGAAACTTGCTGTGCTCAACTTGTCGCGCAGCCGTTTCGCAATGCAAGAGCCATTCAAGCATTTGGACACACTGACATCTTTGGATTTGAGTTACTGCGAAGTTTTAACAAAACTACCTGACTTTTCCGGAGTCCCAAATTTAACAGAACTAAATCTTGATTACTGTACAAATTTGGCAGAGGTTCATGACTCTGTTGGATTCCTTGAGAAGCTTGTTGAGTTGAGGGCCTATGGATGCACCAAGCTTAAGGTTTTTCCATCTTCGATCAAGATGACATCACTGCAAAGTCTTATCCTTAATTGGTGCTCAAGTCTCCAAAGTTTCCCATCTATTTTGGGAAAAATGGACAATCTCATGTCCATTTCTATAGAAGGAACTGGTATTGAACAATTGCCTCCTTCCATTGGAAACCTTGTTGGGCTTCAAGAATTTAGCATGACATCTTGCTTGAGTCTCAAGGAACTGCCAGAAAGCTTTGATATGTTGCAAAATCTTAGGAACCTTGATATCGAAGGATGTCCCCAATTTCGAAGCTTCTTGATGAAATTGAGAGAATCAGGAAAGTCTAGTCCTACCTTTGATAATGTGAAGTCTCTTAATCTCGAGAACTGTGGCCTTAGAGATGAAGATCTTCCCACAATTTTCTATTGTTTCCCAAAACTATCTTTATTAGTCCTTTCAGGAAACTATTTTGTAACTCTTCCAAGTTGCATTCAAGAAATTCAAAGCTTGGAACTACTTCACTTGGACAGCTGCAACCTACTCCAAGAAATCCCTAGCATTCCTCCCAATATACAATACATTAATGCAAGAAATTGCACATCATTGAGTCCAAGGTCATCAAACTTATTATTGAGCCAGGAAATCTTTGAGGCATGTGAGTTACAGGTTATGGTGCCTGGAAGAAGAGTTCCAGAATGGTTTGATTACTGTGCCAAAGGAGAATATCTGACGTTTTGGGCACACCAAAAATTTCCTGTGCTTATTTTTTGCTTTGTTATTGAAGTAGAGGGTGGTGCAACAGAGGATACTTTAAATTGTGAAGTCCAGTTCTCTATAAATGGTGAAGACATTTATGAAATGGAAATGCCACAATGCTTCTCAAAAATGGTCACAGATCATGTGTGGATATATGACTTACGAACGCATCCAACCATCCAGTGGCACAGTCTTGATTCATATCTAGTAGATGACTGGAATCAGCTTGAGATTTCATGTGAGAAAATAAGTGGATCATCAAATATGAGTGTGAGCTGGCGTGGAGTTCATATATGCAAACAAGAAGTTAACATGGAGAATATACTATTCACAGACCCTGAACTTGATTTAGATTCAAACACATACTCTGAGGAGATCGAGGCTGATTCGAATGCTACCAGTGAAGAAAGCACAAAATCAGTACAAGATTTCTCCAATAATTTGAATGATAACTGCTGTGATTTTGAAAACACGGAAAGTTGTGACACGATCAGTAGACAAGAAGAGGAATGGGGGGAAAGAAGTAAAGGAAAAGAAAATAGTGAAACTGCATCCCACAATGACATTGATCAGAGTGACAAGAAGATTTTAATGCATATGCAACCATTGGAAAGTGTTACTGAAGATCCAATTGCTCCTGTGTGTCTTGAGGTCATTGATACTGTCAAAGAGTGCCAAGTGAAGCGACACAAAATGCATTAA 3486 0.389 MMLYGGTSSYGRGWSYDVFLSFRGEDTRRSFTGSLYHSLHKKGINVFIDDDKLRRGEEISPALLRAIEESRISIIVFSQNYASSKWCLDELVKILECMKTRGQLVFPVFFNVDASMVRYQKDSFGRAMSAHEVRYKGNEEKLQKWKQALFEAANLSGWSFKNGYEYELIEKIAEEVSKKINQTPLHIAEYPVGLETRISEVKTLLQIGPGEDIRVIGIYGLGGIGKTTIARALYNFIADQFEAASFLADIRESSNQRQGLVQLQESLLFDIVGDKNIKLGNIYKGIPIIKKRLCCKKVLLILDDVDKLEQLQALAGGRDWFGFGSVIIITTRDKHLLAAHQVDKTYEVKKLNHGEAFELFIWNAFKRKEPEAGYMEISNRVVLHAEGLPLALKVMGSNLIGKSVDEWTSALEKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDIACFFKGETMEYVEKTLKACGFHPKFGIGVLIDRSLVSIDEYNRLRMHDLIQDMGREIAREDSPLEPGKRSRIWYHEDVIEVLTESTGTYKIQGMMVDLPDQYMVHLKNDSFKKMKNLKILIVRNGQFFGSPQDLPNNLRLLDWMEYPSSSFPSSFLPKKLAVLNLSRSRFAMQEPFKHLDTLTSLDLSYCEVLTKLPDFSGVPNLTELNLDYCTNLAEVHDSVGFLEKLVELRAYGCTKLKVFPSSIKMTSLQSLILNWCSSLQSFPSILGKMDNLMSISIEGTGIEQLPPSIGNLVGLQEFSMTSCLSLKELPESFDMLQNLRNLDIEGCPQFRSFLMKLRESGKSSPTFDNVKSLNLENCGLRDEDLPTIFYCFPKLSLLVLSGNYFVTLPSCIQEIQSLELLHLDSCNLLQEIPSIPPNIQYINARNCTSLSPRSSNLLLSQEIFEACELQVMVPGRRVPEWFDYCAKGEYLTFWAHQKFPVLIFCFVIEVEGGATEDTLNCEVQFSINGEDIYEMEMPQCFSKMVTDHVWIYDLRTHPTIQWHSLDSYLVDDWNQLEISCEKISGSSNMSVSWRGVHICKQEVNMENILFTDPELDLDSNTYSEEIEADSNATSEESTKSVQDFSNNLNDNCCDFENTESCDTISRQEEEWGERSKGKENSETASHNDIDQSDKKILMHMQPLESVTEDPIAPVCLEVIDTVKECQVKRHKMH* 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3389 1161 Gene3D - 182 348 IPR027417 -
Amo05g3389 1161 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Amo05g3389 1161 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 1148 - -
Amo05g3389 1161 SUPERFAMILY L domain-like 538 888 - -
Amo05g3389 1161 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Amo05g3389 1161 PRINTS Disease resistance protein signature 292 306 - -
Amo05g3389 1161 PRINTS Disease resistance protein signature 385 399 - -
Amo05g3389 1161 PRINTS Disease resistance protein signature 215 230 - -
Amo05g3389 1161 PRINTS Disease resistance protein signature 621 637 - -
Amo05g3389 1161 SMART till_3 15 155 IPR000157 GO:0007165
Amo05g3389 1161 Gene3D - 350 434 IPR042197 -
Amo05g3389 1161 Gene3D Ribonuclease Inhibitor 526 708 IPR032675 -
Amo05g3389 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 444 IPR027417 -
Amo05g3389 1161 Gene3D Ribonuclease Inhibitor 709 895 IPR032675 -
Amo05g3389 1161 Gene3D - 12 181 IPR035897 -
Amo05g3389 1161 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Amo05g3389 1161 MobiDBLite consensus disorder prediction 1092 1121 - -
Amo05g3389 1161 Pfam TIR domain 16 184 IPR000157 GO:0007165
Amo05g3389 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 1148 IPR044974 GO:0006952
Amo05g3389 1161 SMART AAA_5 212 347 IPR003593 -
Amo05g3389 1161 Pfam NB-ARC domain 196 428 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3389 Amo-Chr5 96340081 96345346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3389 16 781 WRKY Transcription Factor Family AT4G12020 31.461 6.71e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3389 - - ccaj:109810288 1800.41