Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3375 ATGGAACAAAAATCGTGCGAGGAATCTGCGAGAAGCGTTTCGGACTTGAAGTGTGCGAAGAATCTCAACGAATCCGATGAATCAATTGCATGCCCTACACCAAATAAGACGAATGAGCCCTTACCTTCCAAATCCAAAGAGCAACAAACTCAGCTCCCAGAAAAATACAGAGCCGTAGCTGATTTGTTTGGCCATATGAGCTGCTCACTTAGATTGCTGCATCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGTGCCCAAGTTGAAATTCTGGCGCAGAGGAAATTCTCATATGCCCATCTTGCACAAATGAAGTATATACTTCCTGAGGGCATACATATAGATAAGGTCCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGTCAGACATGAAGATCACCTTGGTATTTGATTTTTTGGAAGAGGAATCTAATGAATCTGCTGATATGGCTCTTCGACAATATTTTAGTTCTAGGCTTATTAATTTCTCCAATATGCATCCCGAGGCTGCTGATATTCCAGAGGCTGTTCTGCCAGAGCCCTTTGGCCAAAGACCATGTGGCGTGATTGATGTAGATTTGCCTGTAAATTCTTCCAGAGCTTTTTCGTCAACTTCCAATCAAATTGAATTGTTGCCTGGGAAGTTCCATCTATGTCCATCCTTTAGCCGACACTTTTCTCAAAAGAATGTTGCTAGCCAAACCGAAAAGCTCCAGTGTTTTTCAACAACTAAAGCTTCCTTGTCATCCTGTGCATCTGATTGCCAGGATAACCAAGAAAGCAAATATGCACCACCATCTGATTGTGCAACTAATATGAAAACTGGAGGACAGGGGAAGGAATCTCTCTCTCACTTTCAACCTAATATTGCTAATACACCAGTGCATACTGTCTGTCCTCCACATGATGTTTGTGATAGTAGTTTTGAGAGCCCTGATATCAAAATTTCCTCTTCCTCAAATAGTTTGATGACGGAGACACCTGCACAATCAGCACCTGGGAGATTGATTCCCATTTCTGATGCCAAGCTTCATAACATGGATACCCGAAAGTCAGCATCATGTCGCAAACCAGCAAAAAGAGTGCTCGACTTTCCACTCATGGAAGGAAATGATGGTTTTGACATCAAAGTAGACAACTTAGAACCTACCGGAGGTTCACACAAATACGATAGCATCCTCGAATCTAGTATTGCATGTGCTGAGGATTGGAATGTACTGCCCCAGCAGGTAGAAGAGAGGTCTGGTCACTCTCGTGAGGATACCAACCAAATTCAAGGTGGTTTAGATACAAGGGATCAAAAATCATCTTCGTTGCTTGATCTGGTCAATGTGATTCACTCTATATTTCATTCTGTCAGAGGAGCTTCAATCACGAAAGAGGAGTTTTTGCAAAAGATACTTATGAACAGTTTGGATGTTGTTGAGATTAGTGAAGTTGAAGAACAAATCAATTTTCTTGAAAAGTTGGTGCCAGACTGGATCTGCAGGAAGTTGCTTCCTAGTGGAGATGATATCTACAGCATGAAGAAAGTGTCAGATTTGGACTCAGTTCGATCTAGGCTTCTTGCCAACGTGACTCGGAGCTGA 1593 0.4181 MEQKSCEESARSVSDLKCAKNLNESDESIACPTPNKTNEPLPSKSKEQQTQLPEKYRAVADLFGHMSCSLRLLHLRKKSPTFQNICAQVEILAQRKFSYAHLAQMKYILPEGIHIDKVLVHDKKSLCMKSDMKITLVFDFLEEESNESADMALRQYFSSRLINFSNMHPEAADIPEAVLPEPFGQRPCGVIDVDLPVNSSRAFSSTSNQIELLPGKFHLCPSFSRHFSQKNVASQTEKLQCFSTTKASLSSCASDCQDNQESKYAPPSDCATNMKTGGQGKESLSHFQPNIANTPVHTVCPPHDVCDSSFESPDIKISSSSNSLMTETPAQSAPGRLIPISDAKLHNMDTRKSASCRKPAKRVLDFPLMEGNDGFDIKVDNLEPTGGSHKYDSILESSIACAEDWNVLPQQVEERSGHSREDTNQIQGGLDTRDQKSSSLLDLVNVIHSIFHSVRGASITKEEFLQKILMNSLDVVEISEVEEQINFLEKLVPDWICRKLLPSGDDIYSMKKVSDLDSVRSRLLANVTRS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3375 530 MobiDBLite consensus disorder prediction 412 433 - -
Amo05g3375 530 Pfam DNA replication factor Cdt1 C-terminal domain 427 496 IPR032054 -
Amo05g3375 530 PANTHER EXPRESSED PROTEIN 3 525 - -
Amo05g3375 530 SMART CDT1_2 52 181 IPR014939 -
Amo05g3375 530 SUPERFAMILY "Winged helix" DNA-binding domain 45 183 IPR036390 -
Amo05g3375 530 MobiDBLite consensus disorder prediction 26 49 - -
Amo05g3375 530 CDD Cdt1_m 36 185 IPR014939 -
Amo05g3375 530 MobiDBLite consensus disorder prediction 26 50 - -
Amo05g3375 530 Pfam DNA replication factor CDT1 like 52 120 IPR014939 -
Amo05g3375 530 Gene3D - 429 529 IPR038090 -
Amo05g3375 530 PANTHER DNA REPLICATION FACTOR CDT1 3 525 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3375 Amo-Chr5 96198945 96203695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3375 48 523 Core DNA Replication Machinery Family AT2G31270 31.028 2.43e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3375 K10727 - gmx:102670055 587.03