Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3369 ATGGCTACTAGAAGATATGCTTTTGGGAGGGTTGATGAGGCAACACACCCTGATTCCATGAGGGCTACCTTAGCTGAATTTGCATCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCACTGGCCTTGCTCTAGATAGGATATACAAGGATGAAGCATTCTCAGCTGGAGAACTGTTGTCACTTGCACTTGCACATGCATTTGCACTATTTGCGGCGGTTTCTGCTAGCATGCATGTCTCCGGTGGTCATGTCAACCCGGCGGTGACCTTCGGAGCTCTCATCGGCGGCAGAATCTCCGTCGTCCGTGCCATCTATTACTGGGTTGCTCAACTTCTAGGTTCTATAGTGGCTTCCCTCTTGTTGAGGCTTGTCACCAACAACATGAGACCAGGAGGGTTCCATGTGACATCAGGGCTTGGAGCAGGACATGGGCTTATACTTGAGATAGTGATGACATTTGGGCTTATGTATATAGTATATGCCACTGCTATTGATCCCAAAAGGGGTTCTATTGGGGCCATTGCACCTTTGGCAATTGGGCTCGTTGTTGGAGCAAACATCCTTGTTGGAGGCCCATTTGATGGGGCCTGCATGAACCCAGCACTTGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTATTGGGTTGGCCCACTCATTGGAGCAGCCATTGCAGCAATCATGTATGAGTACATTATCATCCCAGTTGAGCCTCCTCATACTCATCAACCTTTGGCTCCTGAAGATTACTAG 768 0.4922 MATRRYAFGRVDEATHPDSMRATLAEFASTFIFVFAGEGTGLALDRIYKDEAFSAGELLSLALAHAFALFAAVSASMHVSGGHVNPAVTFGALIGGRISVVRAIYYWVAQLLGSIVASLLLRLVTNNMRPGGFHVTSGLGAGHGLILEIVMTFGLMYIVYATAIDPKRGSIGAIAPLAIGLVVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIYWVGPLIGAAIAAIMYEYIIIPVEPPHTHQPLAPEDY* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3369 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Amo05g3369 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Amo05g3369 255 Gene3D Glycerol uptake facilitator protein. 4 243 IPR023271 -
Amo05g3369 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Amo05g3369 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g3369 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3369 Amo-Chr5 96026032 96028260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3369 2 255 Major Intrinsic Protein MIP AT1G17810 73.384 2.35e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3369 K09873 - gmx:100817450 434.876