Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3358 ATGAAAATCTCAAAACCTTCATTCTACTCTCATACTCTGACTTTGTTCTTCTTCATCATCATGATTATGATGAGTCATGTTGCAAACTCTCAGTCTCATCAGCTCTATGATGAAGAACATGCAGTTCTTATGAAGATAAAACAGTACCTTCAAAACCCACCATTTTTAAGCCACTGGACACAGCAATCATCAACTTCCAATAACAACCACTGTTCTTGGCCTGAAATAAACTGCACCACCAATGGCAATTCTGTCATTTCACTCACTCTCTCCAACTCCAACATCACAAAAGCCATACCAACCTTCATTTGTGAACTCAAGAACCTCACTTTTCTTGACTTCAGCTTCAACTTCATCCCTGGTGAGTTCCCAACATCACTATACAATTGTTCAAAGCTTCAGTACCTTGATCTTTCAATGAACAATTTTGTTGGCAACATTCCTGATGATATGCACAGTTATTTATCTGAATTGAGGTACCTTAATCTTGGTTCTACCAATTTCACTGGTGATATTCCTTCTAGTATTGGAAGGTTAAAGGAACTGAGAGAGCTTAAGCTTCATTATTGTTTATTCAATGGAACAGTTCCTGCTGAGATTGGAAACTTGTCCAATCTTGAGTACTTGGATTTGTCTTACAACACCATGTTCCCAAGTTGGAAATTGCCATCAAACTTTACCAAATTGACCAAATTGAAACTCTTTCATGTGTATGCTACAAACTTGGTTGGTGAAATTCCAGAGAACATTGGAGAAATGGTGGATTTGGAGAATTTGGATATGTCACAGAATGGTTTAACTGGTGGAATTCCCAGTGGCTTGTTCCTGCTGAAGAATCTGACCATATTGTACCTTTTCCAGAACAATCTCTCCGGAGAGATACCTAAAGTTGTTGAAGCATTGAATTTGGTTGATCTTGATCTTGCACAGAATAACCTCACAGGGAAAATTCCAGAAGTTCTTGGAAAGCTTATGAACATTACTTGGTTGAACTTGTCACTTAATAAGTTGTCAGGGGAGATTCCAGAAGCCTTCGGTAGTCTTCCAGCTATGGTGGATTTTCGCATGTTCTCCAACAATTTGTCAGGTACTCTTCCATCCGAATTCGGCCGCTACTCGAGGCTTGAAACCTTTCTGGTTTCATCTAATAGTCTTAGTGGAAATTTACCAGAGAATTTATGTTACAATGGCAGGTTACTTAATTTAACTGTTTATGACAATAATCTTAGTGGTGAGTTGCCAAAATCACTAGGAAATTGTAATAGCCTACTTGATCTGAAAATTTACAACAATAAGTTTTCTGGTAACATTCCTAGTGGTCTTTGGACATCTTTGAATTTGTCAAATTTCATGGTGAGCCATAACAATTTCACTGGTGAGCTTCCTGAGATGCTGTCCTCTAGCATTTCGCGGCTCGAGATAAGTTACAATCAACTTTCTGGTAGAATTCCAGCTACTGTGTCTTCTTGGACTAATGTGGTAGTGTTTGATGCAAGTAAGAACAACTTGAATGGAAGCATTCCACAAGAGCTAACTTCTCTTCCAAAGTTAACTACCCTATTGCTTGATCAGAACCAGCTCACTGGGCCGCTTCCTTCGGACATAATCCATTGGGAGAATCTAGTGACTCTGAATTTGAGACAGAACAAGCTCTCTGGACAAATACCAGATGCACTCGGCCGGTTGCCGGTGCTTAGCCAGCTTGACCTTTCAGAAAATCAATTCACTGGCCAAGTTCCTTCTCAGCTTCCAAGACTCACCAATCTCAATCTTTCTTCCAATCATTTGACAGGAAGAGTTCCGAATGAATTCGAAAATTCTGCATTTGACACCAGCTTTTTGGACAATCCTGGCCTTTGTTCTGATACTCCGGAACTGAACCTTGCATTGTGTAATTCTACTCCACAAAGATCAGGCAAGGGTTCATCTTGGTCTGTTTCTTTGATTACAAGTCTTGTTGTAGCAGCCTTCTTAATGGCTTTGTTGGCAACTCTCTTGATTATGAGGCTTTACAGAAAAAGAAAGCAAGAATTTGATAACTCATGGAAGCTAATTTCATTTCAAAGGCTGAATTTCACAGAATCAGACATTCTCTCCTCATTAACTGAGCAGAATATTATTGGCAGTGGTGGATATGGTGCAATTTATCGTTGCCCTGTCGATGATTTCGGCTATGTTGCTGTGAAAAAGATTTGGAATGACAGAAAGTTAGATCAGAAGCTCAAGAGCTCGTTTCGCGCTGAAGTTAATGCGCTGAGCAATATTCGCCATACCAACATTGTGAGGTTGTTGTGCTGCATTTCAAATGAGGAATCTATGCTCCTTGTTTACGAGTATATGGAAAATAGTAGCCTAGATAAGTGGCTGCACAAGAAGTATAATAAGGCCTCCAATTTCTCAAGTTCAGCAGTGCATCATGTTTTTCTTGATTGGCCAAAGAGGTTGCAAATAGCAATAGGAGTTGCACAAGGTTTGAGCTACATGCACCATGATTGCTCACAACCTATTGTTCATAGAGATGTGAAAACAAGCAACATTCTCTTGGATGCTCAATTCAATGCAAAAGTTGCAGATTTTGGTCTGGCTAGGATGTTGCTCAAGCCTGGTCAATTGAACACCATGTCAACTGTGATTGGATCATTTGGCTACATTGCTCCTGAATATACTCAAACAAGAAGGATCACTGAAAAGATTGATGTGTTTAGCTTTGGTGTTGTTCTGTTGGAGCTAACAACTGGCAAAGAGGCGAATGATGGAGACCAACACTTGTCTCTGGCCGAGTGGGCGTGGCGCCACATTCAGATAGGAAGCAACATAGAAGAGCTTCTAGACAAAGATGTCATGGAACCAAGCTACTTGGATGAAATGTGCACAGTTTTCAAACTTGGGGTGATGTGTACTTCAACATTGGCTTCTACTAGGCCTTCCATGAAGGAGGTGCTGCAAATGTTGCAACTCTGCAGAGATCAATTTGATTATGGAGGAGACAGTAAGTTAGGCCATTATGATGTTGTTCCTCTTCTTAAGGATTCAAAAAGTGAAACAAGGTTGGATGTTGTTGATACTTTATAA 3072 0.4004 MKISKPSFYSHTLTLFFFIIMIMMSHVANSQSHQLYDEEHAVLMKIKQYLQNPPFLSHWTQQSSTSNNNHCSWPEINCTTNGNSVISLTLSNSNITKAIPTFICELKNLTFLDFSFNFIPGEFPTSLYNCSKLQYLDLSMNNFVGNIPDDMHSYLSELRYLNLGSTNFTGDIPSSIGRLKELRELKLHYCLFNGTVPAEIGNLSNLEYLDLSYNTMFPSWKLPSNFTKLTKLKLFHVYATNLVGEIPENIGEMVDLENLDMSQNGLTGGIPSGLFLLKNLTILYLFQNNLSGEIPKVVEALNLVDLDLAQNNLTGKIPEVLGKLMNITWLNLSLNKLSGEIPEAFGSLPAMVDFRMFSNNLSGTLPSEFGRYSRLETFLVSSNSLSGNLPENLCYNGRLLNLTVYDNNLSGELPKSLGNCNSLLDLKIYNNKFSGNIPSGLWTSLNLSNFMVSHNNFTGELPEMLSSSISRLEISYNQLSGRIPATVSSWTNVVVFDASKNNLNGSIPQELTSLPKLTTLLLDQNQLTGPLPSDIIHWENLVTLNLRQNKLSGQIPDALGRLPVLSQLDLSENQFTGQVPSQLPRLTNLNLSSNHLTGRVPNEFENSAFDTSFLDNPGLCSDTPELNLALCNSTPQRSGKGSSWSVSLITSLVVAAFLMALLATLLIMRLYRKRKQEFDNSWKLISFQRLNFTESDILSSLTEQNIIGSGGYGAIYRCPVDDFGYVAVKKIWNDRKLDQKLKSSFRAEVNALSNIRHTNIVRLLCCISNEESMLLVYEYMENSSLDKWLHKKYNKASNFSSSAVHHVFLDWPKRLQIAIGVAQGLSYMHHDCSQPIVHRDVKTSNILLDAQFNAKVADFGLARMLLKPGQLNTMSTVIGSFGYIAPEYTQTRRITEKIDVFSFGVVLLELTTGKEANDGDQHLSLAEWAWRHIQIGSNIEELLDKDVMEPSYLDEMCTVFKLGVMCTSTLASTRPSMKEVLQMLQLCRDQFDYGGDSKLGHYDVVPLLKDSKSETRLDVVDTL* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3358 1023 Gene3D Ribonuclease Inhibitor 467 619 IPR032675 -
Amo05g3358 1023 SMART LRR_typ_2 155 179 IPR003591 -
Amo05g3358 1023 SMART LRR_typ_2 203 228 IPR003591 -
Amo05g3358 1023 SMART LRR_typ_2 514 538 IPR003591 -
Amo05g3358 1023 SMART LRR_typ_2 106 130 IPR003591 -
Amo05g3358 1023 SMART LRR_typ_2 583 606 IPR003591 -
Amo05g3358 1023 SMART LRR_typ_2 253 277 IPR003591 -
Amo05g3358 1023 ProSitePatterns Protein kinases ATP-binding region signature. 707 730 IPR017441 GO:0005524
Amo05g3358 1023 SUPERFAMILY RNI-like 302 604 - -
Amo05g3358 1023 SUPERFAMILY L domain-like 67 386 - -
Amo05g3358 1023 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 1016 - -
Amo05g3358 1023 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 1016 - -
Amo05g3358 1023 Gene3D Ribonuclease Inhibitor 196 299 IPR032675 -
Amo05g3358 1023 SUPERFAMILY Protein kinase-like (PK-like) 694 988 IPR011009 -
Amo05g3358 1023 Pfam Leucine Rich Repeat 585 606 IPR001611 GO:0005515
Amo05g3358 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Amo05g3358 1023 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Amo05g3358 1023 ProSiteProfiles Protein kinase domain profile. 701 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3358 1023 Gene3D Transferase(Phosphotransferase) domain 1 780 998 - -
Amo05g3358 1023 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Amo05g3358 1023 Gene3D Ribonuclease Inhibitor 300 394 IPR032675 -
Amo05g3358 1023 Pfam Protein kinase domain 703 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3358 1023 SMART serkin_6 701 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3358 1023 Gene3D Phosphorylase Kinase; domain 1 687 779 - -
Amo05g3358 1023 Gene3D Ribonuclease Inhibitor 395 466 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3358 Amo-Chr5 95932847 95936437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3358 39 985 Receptor kinase-like Gene Family AT5G25930 51.518 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo05g3358 Pkinase 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3358 - - ahf:112801804 1981.84