Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3356 ATGTCATCATCATCACCAAACCCTCAAGTGATAACCTGCAAAGCTGCAGTGGCGTGGGGAGCAGGAGAGCCATTGGTGATGGAGGAAGTTCAAGTCAGCCCTCCAAATTCAATGGAGATTCGTATTAAAGTTGTCTCCACCTCTCTCTGTCGCAGCGACCTTGCAGCCTGGGAATCTCATGCTATATTTCCTCGCATATTTGGTCATGAAGCATCAGGGATTGTTGAAAGTGTGGGGGAAGGTGTGACTGAATTCAAGGAGGGGGACCATGTGCTAACAGTCTTCATCGGAGAATGCAAGGCGTGCAGGCCGTGCACGTCCGGTAAAAGCAACATTTGTCAAGTTTTGGGATTGGAGAGAAAAGGTTTGATGCATAGTGATCAGAAGACACGCTTCTCTGTCAAAGGGAAGCCTGTATATCATTATTGTGCTGTTTCAAGTTTCAGTGAGTATACGGTAGTCCATTCCGGATGTGCAGTGAAAGTTAGCCCACATGTACCTCTTGAGAAAGTGTGCCTTCTGAGCTGTGGAGTTGCTGCAGGTCTAGGCGCAGCATGGAATGTTGCTAATGTGACAAAAGGATCAACTGTGGTGATATTTGGTCTCGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCAAAACTAAGGGGAGCATCTCGAATAATTGGCGTGGATAACAATCCACAGAAGTGTGAAAAAGCAAAAGCTTTTGGATTTACAGAAGTTGTTGACCCGAGTTCCTACCAAGAACCTATTGCTCAGGTTATTAAGCGCATTACTGATGGCGGAGCAGATTTTTCTTTCGAATGTGTAGGCGACACTGACATGATAACCACTGCATTGCAGTCCTGTTGTGATGGATGGGGTTTGACAGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCACTATGGACTATTCTTAATGGGAAGAACACTCAAGGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTTATTAGTAGAGAAGTATGTGAACAAGGAAATTCAAATTGATGACTACATAACACACAATTTGCCATTTGATGACATTAACAATGCTTTTGATCTCATGAAGGAAGGAAAGTGTCTGCGTTGTGTTATTCACATGCCAAGATAA 1137 0.4442 MSSSSPNPQVITCKAAVAWGAGEPLVMEEVQVSPPNSMEIRIKVVSTSLCRSDLAAWESHAIFPRIFGHEASGIVESVGEGVTEFKEGDHVLTVFIGECKACRPCTSGKSNICQVLGLERKGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPHVPLEKVCLLSCGVAAGLGAAWNVANVTKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGFTEVVDPSSYQEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLFLMGRTLKGSLFGGWKPKSDLPLLVEKYVNKEIQIDDYITHNLPFDDINNAFDLMKEGKCLRCVIHMPR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3356 378 Gene3D - 16 371 - -
Amo05g3356 378 PANTHER ALCOHOL DEHYDROGENASE 7 376 - -
Amo05g3356 378 Pfam Zinc-binding dehydrogenase 205 325 IPR013149 -
Amo05g3356 378 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 7 376 - -
Amo05g3356 378 CDD alcohol_DH_plants 11 375 - -
Amo05g3356 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Amo05g3356 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 340 IPR036291 -
Amo05g3356 378 Gene3D - 181 319 - -
Amo05g3356 378 Pfam Alcohol dehydrogenase GroES-like domain 39 161 IPR013154 -
Amo05g3356 378 SUPERFAMILY GroES-like 8 186 IPR011032 -
Amo05g3356 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3356 Amo-Chr5 95924490 95927350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3356 39 113 Monolignol Biosynthesis Gene Families AT2G21890 39.241 1.58e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3356 K00001 - gmx:100819938 699.508