Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3345 ATGGATAATACTATTGTTCTCTTCACACTAAGCTTTCTTCTTGTATCTTCAAATGGCATCATGTCACAGCAGAATTATTCAGGAAACTCAGTACTAAGTTGCAGCAACAACGACGCAGAGGGTCCTTCTTCAGATTTCCTATACACCTGCAATGGATTCCAAAAATCTTGCTTAACCTTTCTCATATTCAAATCCCAAACTCCTCACAACACCATTGCCACAATCTCCAACCTCACTTCCTCAAACCCAGAGGACCTTGCAAGGTTCAACAACGCCACTCATTCCACATTGTTCCGAACCGGCAAAGAAGTCATTGTCCCTCTCAATTGTTCTTGTCCAACCAGAGAACATGATGATGATTATGATGAGTACTATCAAGCCCAAACCACATACATTCTGCCAAAAGATCCAACATATTTTACAACAGCAAATGATGCCTTTCAGGGATTAACCACGTGCGATTCTCTCCAGCGTTACAATCCTTATGGGGTTCTTGATTTGCATCCTGGCATGGTGTTGCACGTGCCCCTCATATGCGCTTGTCCGACGGCGCGTCAAGCCGGTAGCGGCACCAAGTATTTGCTGACCTACTCGGTTAATTGGGGTGATAACGTCTCTAATATCGCAACACAGTTCCATGTCAACGCAAGTAGTATGGTTGATGCCAATGGTTTATCCTCAGAAAATGAAATGCTATATCCATTCACAATTGTCCTCATTCCATTAACAAGTGAACCCAACAGCACAATAACCAAAGTTCAAAATGGTCAACCACCTTCTCCAACTACTCTTTACACTGTAAGAAAGGATAAGACAAAGACAAAAAGAAAAACGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGTTTTTTCTGTTTGTCGTTTTATCTCTCGTGTTTGTGCGTAGAAAGAGATTAGAAATTTCTTCAGGGGAGATAGAAGAGCAGAACAAAGCAAGAGAGGAAATCATGGCGATCAAGAAGATGAATTTGGGTGCCTCTAAGGAAGTGAATTTGTTAGGAAGGATCAATCACTTCAACCTGATAAAGCTGGAAGAATGGCTTGGGAGAAGAAACAGAACCCTAGAACACCAATGTTGGAGAAAGAGGATTCGGATTGCTGTGGATATTGCAAATGGACTTGAGTATCTTCATAACTTCACAGATCCTTGCTATGTTCACAAGGCCATAAACACTGACAATATATTGTTAAATAAAGATCTAAGGGCCAAGATAGCGAATTTCACTTTGGCTAAAGAATCAGATAGAGAAGTAACAAGCTCTTGTTCTTATTACACATCACATGTTGTGGGAACTAGGGGTTATATGGCTCCAGAGTATCTTGATTCAGGGAGAGTCACATCGAAGATGGACGTGTATGCGTTCGGAGTGGTGCTGTTGGAATTGATCACTGGCAAAGATTCTATTATTGTGCAGGATGATGGAAGTGAGACGATGCTTTCATCAATCATATTGAATCTCATTGARAAAGATGATGCAGAAGAGAAACTCGGTTTGTTCATTGATCCTAGTCTCATGGGAAACAGTGAGAAGGTCTGTGCAATTCAGCTAGTTAAGCTAAGCCTAGCATGCTTGGTTGAAGAACCTTCAAGGAGACCAAACATGGCAGAAGTGGTCTCGAGTTTGCTTAGAATATATACAGAAATTGAGACAAGAACGTCACCCTGCCGCATCCATGACAGTGGAAGCACGGAGAGGTTAAATGTATAG 1740 0.4069 MDNTIVLFTLSFLLVSSNGIMSQQNYSGNSVLSCSNNDAEGPSSDFLYTCNGFQKSCLTFLIFKSQTPHNTIATISNLTSSNPEDLARFNNATHSTLFRTGKEVIVPLNCSCPTREHDDDYDEYYQAQTTYILPKDPTYFTTANDAFQGLTTCDSLQRYNPYGVLDLHPGMVLHVPLICACPTARQAGSGTKYLLTYSVNWGDNVSNIATQFHVNASSMVDANGLSSENEMLYPFTIVLIPLTSEPNSTITKVQNGQPPSPTTLYTVRKDKTKTKRKTNFFFFFFFFFFFFLFFLFVVLSLVFVRRKRLEISSGEIEEQNKAREEIMAIKKMNLGASKEVNLLGRINHFNLIKLEEWLGRRNRTLEHQCWRKRIRIAVDIANGLEYLHNFTDPCYVHKAINTDNILLNKDLRAKIANFTLAKESDREVTSSCSYYTSHVVGTRGYMAPEYLDSGRVTSKMDVYAFGVVLLELITGKDSIIVQDDGSETMLSSIILNLIEKDDAEEKLGLFIDPSLMGNSEKVCAIQLVKLSLACLVEEPSRRPNMAEVVSSLLRIYTEIETRTSPCRIHDSGSTERLNV* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3345 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 4 325 - -
Amo05g3345 579 Gene3D Transferase(Phosphotransferase) domain 1 352 570 - -
Amo05g3345 579 Coils Coil 576 579 - -
Amo05g3345 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 325 - -
Amo05g3345 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 323 563 - -
Amo05g3345 579 CDD LysM 196 240 IPR018392 -
Amo05g3345 579 ProSiteProfiles Protein kinase domain profile. 253 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3345 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 323 563 - -
Amo05g3345 579 Pfam Protein tyrosine and serine/threonine kinase 364 552 IPR001245 GO:0004672|GO:0006468
Amo05g3345 579 Gene3D LysM domain 195 253 IPR036779 -
Amo05g3345 579 ProSiteProfiles LysM domain profile. 195 240 IPR018392 -
Amo05g3345 579 SUPERFAMILY Protein kinase-like (PK-like) 324 560 IPR011009 -
Amo05g3345 579 Pfam LysM domain 197 241 IPR018392 -
Amo05g3345 579 SUPERFAMILY LysM domain 195 241 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3345 Amo-Chr5 95836582 95838534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3345 329 555 Receptor kinase-like Gene Family AT2G23770 37.398 6.28e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo05g3345 PK_Tyr_Ser-Thr 3.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3345 - - gmx:100806221 592.038