Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3328 ATGTCAACGCCACCACTCACCTCTTCATCTTCCTTTAGCTATGCATTCACGTATGATGTGTTTATTAGTTTTAGAGGCACTGATACTCGCTACGGTTTCACTAACAATCTCTACCAAGCTCTACATAGAAAGGGAATCCACACCTTCTTTGATGATGAAGAGCTTCGGAAAGGAGAGGTGATCACACCCTCACTTCTCAAGGCAATTGAAGGATCTAGAATTGCTATTGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTAGTCGAACTTGCCAAGATCATGGAGTGCGTTAAGGGGAAGGGCCGGTGGGTCTTTCCGGTCTTTTATGATGTTGATCCAAGTGACGTGAGACACCAAAAAGGAAGCTATGGAGAAGCGTTCACTAAGCATGAGGAGAGGTTCAAAGACGACACGGAGAAAGTGCAGAAATGGAGGAAAGCTCTTCATCAAGCGGCTAACCTGTCCGGCAATGATTTCAAACTTCAGAGTGAATATGAACATGCTTTTATTGAGGCAATCGTGAAGGAGATCTTAAACAGGGTCTGTCGTGTTCCTTTGCATGTTGCTAATTATCCTGTTGGACTGGAATCTCGAGTACTAAAAGTAAACAAGCATCTAAATCGTGAATCCAATAGAGGAGCCCAGATGGTAGGAATATATGGAGCTGGTGGAATCGGTAAAACAACTCTTGCTAAAGCAGTTTATAACTTTATCGCTGACCAATTTGAAGGTTTGTGTTTTCTCGAAAATGTGAGAGAAAATTCAATTAAACATGGTTTAGTATATCTCCAGGAGCGGCTTCTTTGTAAAATTCTTGGAGAGAAAGATATACAGCTAGCAAGTTTAGGTGAAGGAATTTCATTAATAAAGCAAAGGTTCAAGAGCAAGAAGATTCTCTTGGTTCTTGATGATGTTGAAAAACTTGAGCAATTGCAGGCAATTGCTGGAAGGCCCGATTGGTTTGGTTCTGGCAGCGTAATCATCATAACAACTCGGGACAAACATTTGTTGGCAAGTCATATGGTTGAGAAAACATACCAAGTGAAGGAATTTGATAAAAAAGAAGCACTTGAGTTGCTTAGGTGGAATGCTTTCAAATGTGAAAATGTTGATCCATGTTATATGGACATTTTAAATAAGGTAGTGTCTTATGCTTCTGGCCTTCCATTGGCTCTGGAGGTAATAGGTTCGAATTTGTATGGAAGGAGTGTAGAAGAATGGATATCTGCATTAGATGAGTATAAAAAAATTCCTAATAAAGACATCCAAAAGATACTTAAAGTAAGTTTTGATGCTTTAGAGGAATATCATCAGAAACTTTTTCTTGACATTGCTTGTTGCTTCAAAGAATATAGTTTGGAAGATCTTGAAAATACACTTCATGCTCTTCATGATGTTAGCCCAAAACTTGGTATTCGTGTGTTGGCTGAAAGATCTCTAATAAAGGTTCACGGTTGTGGTGTGACACAACATGACTTGATTCAAGATATGGGTAGAGAAATTGTTCGTCAAGAATCACCAAAAAATCCTGGTAAACGAAGTCGGTTATGGCTTTGTGAAGATGTTATACAAGTTTTACAAGAGAACATTGGAACCGATGAAATCGAAGTCATAGTTCTAGAAGCTCCCATGTCTAGAGTAATAGAATGGGATGGAAAGGCCTTCAAAAAGATGGGAAACCTCAAAGCACTTATTATTAAAAGTGGCAATCTTTTCAATGGTCCGGATCATCTTCCAAATAGTTTAAGAGTGTTGGAATGGCATGGATATCCTTCACATTCTTTACCAGCTGATTTTCATCCAAAGAAGCTTTTCATACTCAAGTTGCCCCACAATTGCGTTACCCCACTGCCGTTAGTTAAGCTATTAAAGGAGTTTGTGGATATGAGTGTTTTGGATTTTAGTAGGAATGATTGGATAACACATATACCCGATGTTTCAAGTGCCCCAAATTTAAAAGAATTACGCTTTGCAGGTTGTGAGAATTTAGTTAGAATTGATCAGTCAGTTGGATTTTTGGGTAAACTTAGTAAGTTAAATGTTAACGGTTGTACAAAGCTTCGGAGTCTTCCTTCCCTTATGTTACCTTCTCTTGGCTACCTCTTTCTTAGAGATTGTCTTAGTCTTGAGAGTTTTCCTGAAATATTGGGAAAAATGGAAAATATGACATATCTTGAATTGTTTAATACTCCCATAAAAAAATTGCCATATTCCATTTGTAATCTTCCTCGACTTGAGCTTTTGAAACTGGAATTTGGTGAAACTATTATATTACCAAGTAGCATTTTCATGTTGCAAGAACTCCAGTTTTTGTACCTTCGGAGCCATACGGTGTTACTACCTAATGAAGAAGAAGGTGCAGGGCAAGGGAGTTCAGTATCGTGTTCAACCACAACACATCTTGATTTGTCTTTATGCAATCTGTCAGATAAATTGCTCGAAATATTTCTTGCTCGGTTTCCCAATTTAAAACATTTAGATTTGTCAGACAGTAATGTCAGAATTCTTCCAGCATGCATAAAAAATTGTCACCTTCTGATGTTTCTTCGTCTTTGGGGCTGCAAGAATCTTCAAGAGATTAGAGGGATTCCACCCAACATACAATCTTTAAATGCATCTTTCACCACATCGTTAAATTGTTCGAGTAGAAGGATATTATTGAATAAGAAACTGCATGAAGAGGTTGGACAGAAGAGATTTATTTTGCCGGGAACAAGTATTCCAAGTTGGTTTGAGAAACGGAGAAGTGGACAACCAATTTCTTTCCGGTTTCGTAATAAGTTCCCCTCCATATCTCTCTGTTTTCTTTTGAAGGAGTCTAATAATGAACGTTCTATTAGCCCTCGTTTGGAATTGATCATCAATGGAAATCACAATGAGCGGCACATATTTCATGATAGAAGTTGCATGGGTTCTCCTGGTCATATACGGATTTATGATTTAGAAGATACTACGGGTTTACAGTTTAAACAAAATGAATGGAATCAAGCGCTGGTCTCTGTTTCAGAATTTGTTGGTAGGTATGATGCAAGGGAAGTGAGGGCAGAGGAGTGGAGCAGCATAGAGATTGGAGTGCATATAATCAAAGAGAGAAGTAACATGGATGATATCCAATTCACTCATCCACTTTTGGACAAAGATCATCATAAAGCACTGCACATGAGGGATTCAAACAAGCACCATGTGCATGAGCAACGAGTCAGACATCTGGGATTTTCACTTCCAGCTTCACCATACAGCGATATTTTCAAATGGGATCCATTTGACTATATTCCTTTTGTAGGAGGAACAGTTATCCTGATGCCAGAGACATCTAAATTTCAGCATCTGAAACTCGAAAAGGCTCCAGGTGAATCTTCTAATACTAAATCTTCTGGCAAGGGCAAGGCTGGAGTAGAAGAAGTACATCCAGTTTCCACTTGCATTGCATCCTCAACCTCATCAATTGATAAATATTTGAACGATGAAAATCAAACGATTGTTGATGATGATGATGAAATGGATTCATTTTATGCTTCTCTTGATGTTGCTCACATCCCAATGCTTTCTCATTCCCATGAGAAGTTGGTTACCGCTACTCCAAGTGATGAAGAAACCAGAAAAGCATTGAGATCTGTACAAAGATTCCTCTCCCAGGATGCTTCAATTTTGTTGTATCCTGAATTATGCAGTATCTTTAAAGCCAACCTAGATTACCTCTCTAAATTATCTGCAGATCATGGCAGCATATCAACAGAAATGAGCAAAGCAATATCAGAGGCTTCACAGTCTTTGACTCATTGGAGTAGGGACTACAGTGAAGCAAGTAAGAAAATTGATTCTATAATGTCTCATTTGCAGAGAGCTGATGAATTGGAAATGAATCTGGAAAGTAACAAAAAAAGGTTTTTGGAAGAAACTGAGCAACTCAATGCCATTAAAGCTAATATGTCTGATTCTCAATCCAAAGCAAGCATCTCTCGTAAGAGAAAGAGAGAGATTTTTGAGCAAGGAAAGACAATTAAAGCTGAATTGGATGAATTAAGGGAGAATGTGCCACAATGGGAACAAGAGCACACTTTGGCAAAGAAGACTCAGGCAAAAATCATAGCTGAATGGTCAAGACTGCGAGAAAATTTTCAGAATATTGAAAAAGACTGGAATTTATAA 4158 0.3834 MSTPPLTSSSSFSYAFTYDVFISFRGTDTRYGFTNNLYQALHRKGIHTFFDDEELRKGEVITPSLLKAIEGSRIAIVVFSKNYASSSFCLVELAKIMECVKGKGRWVFPVFYDVDPSDVRHQKGSYGEAFTKHEERFKDDTEKVQKWRKALHQAANLSGNDFKLQSEYEHAFIEAIVKEILNRVCRVPLHVANYPVGLESRVLKVNKHLNRESNRGAQMVGIYGAGGIGKTTLAKAVYNFIADQFEGLCFLENVRENSIKHGLVYLQERLLCKILGEKDIQLASLGEGISLIKQRFKSKKILLVLDDVEKLEQLQAIAGRPDWFGSGSVIIITTRDKHLLASHMVEKTYQVKEFDKKEALELLRWNAFKCENVDPCYMDILNKVVSYASGLPLALEVIGSNLYGRSVEEWISALDEYKKIPNKDIQKILKVSFDALEEYHQKLFLDIACCFKEYSLEDLENTLHALHDVSPKLGIRVLAERSLIKVHGCGVTQHDLIQDMGREIVRQESPKNPGKRSRLWLCEDVIQVLQENIGTDEIEVIVLEAPMSRVIEWDGKAFKKMGNLKALIIKSGNLFNGPDHLPNSLRVLEWHGYPSHSLPADFHPKKLFILKLPHNCVTPLPLVKLLKEFVDMSVLDFSRNDWITHIPDVSSAPNLKELRFAGCENLVRIDQSVGFLGKLSKLNVNGCTKLRSLPSLMLPSLGYLFLRDCLSLESFPEILGKMENMTYLELFNTPIKKLPYSICNLPRLELLKLEFGETIILPSSIFMLQELQFLYLRSHTVLLPNEEEGAGQGSSVSCSTTTHLDLSLCNLSDKLLEIFLARFPNLKHLDLSDSNVRILPACIKNCHLLMFLRLWGCKNLQEIRGIPPNIQSLNASFTTSLNCSSRRILLNKKLHEEVGQKRFILPGTSIPSWFEKRRSGQPISFRFRNKFPSISLCFLLKESNNERSISPRLELIINGNHNERHIFHDRSCMGSPGHIRIYDLEDTTGLQFKQNEWNQALVSVSEFVGRYDAREVRAEEWSSIEIGVHIIKERSNMDDIQFTHPLLDKDHHKALHMRDSNKHHVHEQRVRHLGFSLPASPYSDIFKWDPFDYIPFVGGTVILMPETSKFQHLKLEKAPGESSNTKSSGKGKAGVEEVHPVSTCIASSTSSIDKYLNDENQTIVDDDDEMDSFYASLDVAHIPMLSHSHEKLVTATPSDEETRKALRSVQRFLSQDASILLYPELCSIFKANLDYLSKLSADHGSISTEMSKAISEASQSLTHWSRDYSEASKKIDSIMSHLQRADELEMNLESNKKRFLEETEQLNAIKANMSDSQSKASISRKRKREIFEQGKTIKAELDELRENVPQWEQEHTLAKKTQAKIIAEWSRLRENFQNIEKDWNL* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3328 1385 SMART till_3 17 157 IPR000157 GO:0007165
Amo05g3328 1385 CDD AAA 222 336 - -
Amo05g3328 1385 PANTHER ARCHAEAL ATPASE 28 1001 - -
Amo05g3328 1385 Gene3D Ribonuclease Inhibitor 547 704 IPR032675 -
Amo05g3328 1385 Gene3D Ribonuclease Inhibitor 705 896 IPR032675 -
Amo05g3328 1385 SMART AAA_5 216 358 IPR003593 -
Amo05g3328 1385 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
Amo05g3328 1385 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 1001 IPR044974 GO:0006952
Amo05g3328 1385 SUPERFAMILY L domain-like 543 884 - -
Amo05g3328 1385 Pfam NB-ARC domain 200 436 IPR002182 GO:0043531
Amo05g3328 1385 Gene3D - 354 437 IPR042197 -
Amo05g3328 1385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Amo05g3328 1385 Coils Coil 1327 1361 - -
Amo05g3328 1385 Gene3D - 181 349 IPR027417 -
Amo05g3328 1385 PRINTS Disease resistance protein signature 219 234 - -
Amo05g3328 1385 PRINTS Disease resistance protein signature 295 309 - -
Amo05g3328 1385 PRINTS Disease resistance protein signature 388 402 - -
Amo05g3328 1385 PRINTS Disease resistance protein signature 821 837 - -
Amo05g3328 1385 Gene3D - 15 180 IPR035897 -
Amo05g3328 1385 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Amo05g3328 1385 Pfam TIR domain 18 182 IPR000157 GO:0007165
Amo05g3328 1385 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Amo05g3328 1385 Coils Coil 1278 1305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3328 Amo-Chr5 95573427 95582338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3328 12 843 WRKY Transcription Factor Family AT4G12020 30.012 6.95e-77 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3328 - - ahf:112801816 1858.96