LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g3314	ATGGATTTGAGCTCTAAATCCTACAAATGGAAGTATGATGTATTCTTGAGCTTTAGAGGGGATGATACACGTAGGAGTTTCACAAGCCATCTTTATCATGCTCTTTGCCAAAAGGGTGTCAATACTTTCATAGACTACAAGGATCTCATAAAGGGAGAGCAGATAACACCTTCACTTCTTAGGGCTATTGAAGCCTCAAGGATCTCAGTCGTTGTATTATCTGAAAACTATGCATCTTCCACTTCTTGCTTGGATGAACTCCTTAAGATCATTGAGTGCAAGGACACTAAGGGTCAGCTGGTTTTGCCGGTCTTTTATGGTGTGAATCCATCTCAAGTAAGAGAACAGAAGGGAAGTTTTGCAGAAGATTTGGCCAAACATGAAGACAAGTTCAGGGATGATGTCAACAAAGTAAAAAGGTGGAGGGCAGCACTATGTGAGGCTTCTACTTTGTCTGGGTGGCACATGGGTGACGGGCAAGAATCAAAATTTGTCCAGAGAATTGTTGAGGAGATATTGAGCAAGTTGAACCGCACACCTTTCAATGTTGCTAAGCATCCTGTTGGATTGGATTCACCTATTGAAGATATTAAAACACTTTTAGATACTGGATCAGATGATGTACAGGCTATAGGAATTTATGGAATTGGAGGTATAGGGAAAACAACACTTGCTAAGGCTGTTTATAACCATATTGCTAACCAGTTTGAGGGTAGYGCMTTCATTGCAAATGTTAGAGAAATTTCAAGTCAAAGATCTGGGTTAGTTCAACTACAAGAAGCTCTTCTTTCTGAGATTTTGAACCATAGATATTGTAAAGTAGGAAACAAAGACAGAGGCATTAATATGATAAAGAATAGGCTTTGCAGCAAAAAAGTTCTCATAGTTGTTGATGATGCTGATTCGTTGGAKCAACTGGAATCATTGATTGGAGAATATAGTTGGTTTGGTTCTGGAAGTAGAATCATCATAACAACTAGAGATGAGCATTTGCTAGTTGCTCACAATGTGGAAACAATCTACAAGGTCAACGAATTAAATMATGGTCATGCSCTTGAACTTTTTAGTTGGTTTGCGTTCAAAAATCCATGTCCTCCAACAAATTRTGAGAAGCTTTCATCCCACATATTAAACTATGCCAAGGGCCTCCCATTGGCSCTAACAGTTTTGGGATCTCACCTGTGTGGTAGGGGAAAAGCTGAGTGGATAAGTGCATTAGCTAAACTGAAAAAAGTTCCAAACAAACAGATTTTTGAAATACTTAAAATCAGCTTTCATGGATTGGAAGAGAATGAAAAGGCTATTTTTCTTGATATTGCATGTTTCTTTAAGGGAGAGGACAGACAATATGTGAAAATGATATTAGATGGTTGTGACCTACATTCGGATAATGGTTTCGGAGTTCTATTGGAGAAGTCTCTAATTACAATAGAAGTTAATAAGATTTGGATGCATGATTTGCTACAGGAAATGGCTAAAGAAATTGTGCGACGTGAATCCCCTAGTGATCCTGGTAAACGTAGCAGATTATGGTTTAATGAGGATGTTCTTCATGTATTAAAACACAATAAGGGAAGTAACAACATTGAAGGCATAAGGCTAGATATACCAGAATCAGAGACAGAGTACATAGAGGCCAAGGCCTTGTCAAGGATGAATAGACTCAGAATTCTTATTATCAACAATATGCATGTTACAGATGATATCCAGTATCTACCTGATAATCTAAGATTGATTAATTGGCCAAGATACCCCTCTTCAACTCTACCACCAAATTTCTATCCAAGGAGGCTTGTCTGTCTAAATATGAGTCATAGCCGCCTCAAGCACTTGTGGAAGGGAGTTAAGATATTCAGAGACTTGAAACTTGTGTCCTTTAGCAGCTGTGAACACCTTAAAGAAATTCCAGACTTCTCAATGGTTCCAAACCTAGAAAGCCTAAGCCTAGACAACTGTAGAAGTTTAATTAAGGTGCATGAGTCTGTGGGAACTCTTGATAAGCTTGTTACTTTAAACCTTCTATTTTGCTCCAATCTCAAGACGTTTCCAAGTCGTTTCATGCTAAAATCACTCCGTACTCTCCTCCTCACTGGCTGCTCAAAACTAAAAAAGTTTCCGGAGATTGTGGGGAACATGGAACATCTTGAAGAAATCCTTCTCCAAGGAACAGCAATAAAAGAACTACCTCAGTCGATTGAATATCTAAGTGGGCTGAAGTCCTTATTCTTAGAGTCTTGCCAAAGTCTTGAGCATCTCCCCAGTAGCCTTCAGAAGTTGCAAAACCTTACCATTCTTGATCTAAGTGGCTGCTCTAAGCTTCAAAAGATTCCAAAGCTTCCCCTAAATACAAGATATATAGACTTGAGTAATTGTAGATCTTTGACAAGCTTTCCAACATTATCCAGCATATCAAATTTTATTGCAGAGGATTTTCCAAGGTTTTATCAAATTAGATTTGTTAACTGCCATAAACTGGTAAATAAACAAGTCCTGGAGCACATAACAAATCTCTTCTGTAGTAAGGATATGATGCTTCCAGAATATATTTCTTGTGAAGTTGTACTTCCAGGGAGCAAGATCCCAGATTGGTTCCAATACCAGAGTACTAATAATTCCATTTATCTTGAGGTATCTTCAGGTTTATATGGTAAGCCCATGGAGGTGTTTTTTGGCGCAGTTTTTGAGTTGGATAAAGGTGTTACTACAACTGGCCTGTTTGCAAGTAAATTTGATGTTATTGTCAATGATATAAAGATAAATATGTCTACAAGCTATTTTGAGGCACTGGACTCAAGTCATGTGTGGTTGAGTCGGTTGAAACTTGATCATTTTATGTGGCACCTTAAAAGTATGCGTCAATGGAATCACTTTCAGATTTCATTTTCAATCTTTGAAACATCATCAAAGGAGAAGATAGGGGCAACCTTGAAGAGTTGTGGTTTCCATGTTTGGTACAATCAAGAAGGGTATGGGATTGATCATACAACAGTTAGGAAGTCCACAGGTTGGCTGTCAGATACAGATTCTGTAGTTACTGTAATCTCGGCATTAGCATTATTAGATGCAGTTGTGGATTCTGTCACTGCCGACGACGACGAAGAAGAAGAAGAATAA	3114	0.3831	MDLSSKSYKWKYDVFLSFRGDDTRRSFTSHLYHALCQKGVNTFIDYKDLIKGEQITPSLLRAIEASRISVVVLSENYASSTSCLDELLKIIECKDTKGQLVLPVFYGVNPSQVREQKGSFAEDLAKHEDKFRDDVNKVKRWRAALCEASTLSGWHMGDGQESKFVQRIVEEILSKLNRTPFNVAKHPVGLDSPIEDIKTLLDTGSDDVQAIGIYGIGGIGKTTLAKAVYNHIANQFEGSAFIANVREISSQRSGLVQLQEALLSEILNHRYCKVGNKDRGINMIKNRLCSKKVLIVVDDADSLXQLESLIGEYSWFGSGSRIIITTRDEHLLVAHNVETIYKVNELNXGHALELFSWFAFKNPCPPTNXEKLSSHILNYAKGLPLALTVLGSHLCGRGKAEWISALAKLKKVPNKQIFEILKISFHGLEENEKAIFLDIACFFKGEDRQYVKMILDGCDLHSDNGFGVLLEKSLITIEVNKIWMHDLLQEMAKEIVRRESPSDPGKRSRLWFNEDVLHVLKHNKGSNNIEGIRLDIPESETEYIEAKALSRMNRLRILIINNMHVTDDIQYLPDNLRLINWPRYPSSTLPPNFYPRRLVCLNMSHSRLKHLWKGVKIFRDLKLVSFSSCEHLKEIPDFSMVPNLESLSLDNCRSLIKVHESVGTLDKLVTLNLLFCSNLKTFPSRFMLKSLRTLLLTGCSKLKKFPEIVGNMEHLEEILLQGTAIKELPQSIEYLSGLKSLFLESCQSLEHLPSSLQKLQNLTILDLSGCSKLQKIPKLPLNTRYIDLSNCRSLTSFPTLSSISNFIAEDFPRFYQIRFVNCHKLVNKQVLEHITNLFCSKDMMLPEYISCEVVLPGSKIPDWFQYQSTNNSIYLEVSSGLYGKPMEVFFGAVFELDKGVTTTGLFASKFDVIVNDIKINMSTSYFEALDSSHVWLSRLKLDHFMWHLKSMRQWNHFQISFSIFETSSKEKIGATLKSCGFHVWYNQEGYGIDHTTVRKSTGWLSDTDSVVTVISALALLDAVVDSVTADDDEEEEE*	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g3314	1037	Pfam	TIR domain	11	180	IPR000157	GO:0007165
	Amo05g3314	1037	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	12	691	-	-
	Amo05g3314	1037	Gene3D	-	8	174	IPR035897	-
	Amo05g3314	1037	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	439	IPR027417	-
	Amo05g3314	1037	Gene3D	Ribonuclease Inhibitor	687	840	IPR032675	-
	Amo05g3314	1037	PRINTS	Disease resistance protein signature	210	225	-	-
	Amo05g3314	1037	PRINTS	Disease resistance protein signature	757	773	-	-
	Amo05g3314	1037	PRINTS	Disease resistance protein signature	380	394	-	-
	Amo05g3314	1037	PRINTS	Disease resistance protein signature	287	301	-	-
	Amo05g3314	1037	Gene3D	-	345	429	IPR042197	-
	Amo05g3314	1037	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	154	IPR035897	-
	Amo05g3314	1037	Pfam	NB-ARC domain	193	413	IPR002182	GO:0043531
	Amo05g3314	1037	Gene3D	Ribonuclease Inhibitor	517	686	IPR032675	-
	Amo05g3314	1037	Gene3D	-	175	341	IPR027417	-
	Amo05g3314	1037	ProSiteProfiles	TIR domain profile.	10	176	IPR000157	GO:0007165
	Amo05g3314	1037	Pfam	C-JID domain	855	988	IPR045344	-
	Amo05g3314	1037	SUPERFAMILY	L domain-like	483	825	-	-
	Amo05g3314	1037	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	691	IPR044974	GO:0006952
	Amo05g3314	1037	SMART	till_3	11	151	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g3314	Amo-Chr5	95406209	95411045	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g3314	12	810	WRKY Transcription Factor Family	AT4G12020	33.374	8.78e-115	388

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g3314	-		-	ahf:112749316	1507.66