Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3292 ATGGCAACTAGACTACAGTTTGAGAATAATTGTGAAGTTGGAGTGTTTTCTAAACTTACTAATGCCTATTGTTTGGTTGCCATAGGAGGATCTGAAAACTTCTACAGTGTATTTGAATCTGAGTTAGCAGACGTCATCCCAGTAGTCAAAACATCCATTGGTGGAACTCGAATTATTGGTCGCCTTTGTGCAGGAAACAAAAATGGGCTTCTGCTGCCCCATACAACTACAGACCAAGAACTTCAACATTTGAGAAACTGTCTGCCCGATCAAGTAGTCGTTCAGAGAATAGAAGAAAGATTATCTGCTCTTGGAAATTGCATAGCTTGTAATGACCATGTGGCTCTCACTCACACCGATCTTGACAGGGAGACGGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCCGGCAATATTCTTGTCGGTAGCTACTGTGCCTTCTCCAACAGAGGGGGCTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACGGTGAACCGTGGCAGTGAAGTGATAGCTGCTGGAATGACAGTGAATGACTGGACAGCATTTTGCGGCTCGGACACCACAGCGACAGAGCTGTCTGTGATTGAGAGCGTTTTCAAACTGAGGGAGGCACAGCCTAGTGCCATTGTGGATGAGATGAGAAAATCTCTCATTGATAGCTATGTCTAA 738 0.4512 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSVFESELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3292 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 Gene3D - 1 225 - -
Amo05g3292 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Amo05g3292 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 SUPERFAMILY Pentein 1 224 - -
Amo05g3292 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Amo05g3292 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3292 Amo-Chr5 95143000 95146053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3292 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 5.09e-174 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3292 K03264 - ming:122066887 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3292 05 95143000 95146053 Amo19g2312 19 104255584 104260502 PCT
Amo05g3292 05 95143000 95146053 Amo09g1861 09 77175214 77179352 PCT
Amo19g2312 19 104255584 104260502 Amo05g3292 05 95143000 95146053 PCT
Amo09g1861 09 77175214 77179352 Amo05g3292 05 95143000 95146053 PCT