Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3279 ATGCATGTTGGATGTGATGGATCGATTTTGATTGATTCCACAAAGGGTAACAAAGCAGAAAAGGGTTCACCAGCAAATTTGAGTTTGAGAGGCTATGAAATCATAGATGACATCAAAGAAGCGCTTGAAAGACAATGCCCTGAAGTAGTTTCATGTGCTGATATTCTTGCTTTAGCTGCTAGAGATGCAATTTTCTTTGCAGGGGGGCCAGTTTATGACATACCAAAGGAAAGAAAAGATGGAACAAGGTCCAAAATTGAGGATACCATTAATCTGCCATCTCCCAACTTCAATGCTTCTGATCTCATCAAGATGTTTGGCCAACATGGCTTTTCAGCACAAGAGATGGTGGCTCTCTCTGGGGCTCACACAATAGGAGTAGCTAGGTGTTCTTCTTTCAAGAACAGGCTAACAAAAGTGGATCCAAATTTGAACTCAGAATTTGCAAACACACTGTCCAGAACATGCAGTGCCGGTGACAATGCTGAGCAGCCCTTCGATGAAACAAGGGATGATTTCGACAACTTGTACTTCGACGCTTTGGTCTCCGGCAATGGGGTTCTCACATCCGATCAAACATTGTTCACTAGTCCAAGAACTAGGAATTTTGTCAACTCTTATGCACAGAACCAAGCCTTGTTCTTCTTGGATTTCCAACAAGCCATGGTCAAAATGAGCTTGCTTGATATCAAAGAAGGTTCCAAGGGTCAAGTTAGAGATAACTGCCACAAAATAAATTGA 741 0.4211 MHVGCDGSILIDSTKGNKAEKGSPANLSLRGYEIIDDIKEALERQCPEVVSCADILALAARDAIFFAGGPVYDIPKERKDGTRSKIEDTINLPSPNFNASDLIKMFGQHGFSAQEMVALSGAHTIGVARCSSFKNRLTKVDPNLNSEFANTLSRTCSAGDNAEQPFDETRDDFDNLYFDALVSGNGVLTSDQTLFTSPRTRNFVNSYAQNQALFFLDFQQAMVKMSLLDIKEGSKGQVRDNCHKIN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3279 246 SUPERFAMILY Heme-dependent peroxidases 4 246 IPR010255 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PANTHER PEROXIDASE 47 4 244 - -
Amo05g3279 246 PRINTS Plant peroxidase signature 114 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 220 233 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 180 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 30 43 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 68 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 49 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 CDD secretory_peroxidase 4 245 IPR033905 GO:0004601|GO:0042744
Amo05g3279 246 ProSiteProfiles Plant heme peroxidase family profile. 4 246 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 Gene3D Peroxidase, domain 2 93 225 - -
Amo05g3279 246 PRINTS Haem peroxidase superfamily signature 50 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Haem peroxidase superfamily signature 115 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Haem peroxidase superfamily signature 68 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PRINTS Haem peroxidase superfamily signature 166 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 PANTHER PEROXIDASE 25-RELATED 4 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 Gene3D - 4 246 - -
Amo05g3279 246 Pfam Peroxidase 4 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Amo05g3279 246 ProSitePatterns Peroxidases proximal heme-ligand signature. 115 125 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3279 Amo-Chr5 94986662 94987833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3279 4 246 Peroxidase AT4G33420 73.663 1.97e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3279 K00430 - gmx:100809245 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3279 05 94986662 94987833 Amo19g2328 19 104978610 104989503 PCT
Amo19g2328 19 104978610 104989503 Amo05g3279 05 94986662 94987833 PCT