Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3273 ATGGCAGAGATGGGTGAGGAGGTGAAAGCAATTGTTCCCGAGTCTGTGCTTAAGAAGCAGAAAAGGGAGGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCTTAATGCTGCAAAGAAGAAAAGAGCTGAGAGCCGCAAGCTCATTTACCGCAGGGCAAAGCAATATGCAAATGAATACCAGGAGCAGGAAAAGCAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAGCTCCTGTTTATCATCCGTATCCGTGGTATCAATGCCATGGACCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTCAATGGTGTCTTTCTGAAGGTGAACAAGGCCACAATGAACATGCTTCACAGGGTTGAACCATATGTGACCTATGGATACCCAAATCTGAAGAGTGTAAAAGAGCTTATTTACAAGAGGGGCTTTGGTAAGCTGAACAAGCAGAGAATTGCCCTAACCGACAATTCCATCATTGAGAAGGCACTGGGCGAACATGGAATCATCTGCATCGAAGATCTTATCCATGAGATCATAACCGTTGGATCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCATTGGGTGGCCTGAAGAAGAAGAGAAACCACTATGTTGAAGGAGGAGATGCCGGAAACAGGGAGAACTACATCAATGAGCTTATCAGGAGAATGAATTAG 741 0.4507 MAEMGEEVKAIVPESVLKKQKREEEWALKKKEELNAAKKKRAESRKLIYRRAKQYANEYQEQEKQLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNSIIEKALGEHGIICIEDLIHEIITVGSHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3273 246 PANTHER 60S RIBOSOMAL PROTEIN L7 1 246 IPR039699 -
Amo05g3273 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Amo05g3273 246 Coils Coil 17 37 - -
Amo05g3273 246 Coils Coil 45 76 - -
Amo05g3273 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Amo05g3273 246 Gene3D - 87 191 IPR036919 -
Amo05g3273 246 Gene3D - 192 246 IPR036919 -
Amo05g3273 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 1 246 - -
Amo05g3273 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Amo05g3273 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Amo05g3273 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Amo05g3273 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3273 Amo-Chr5 94884160 94887312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3273 7 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.000 1.15e-154 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3273 K02937 - gmx:100813342 398.667