Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3269 ATGGTTTGTGAATTGTGTGAGGAGAGGTGCAACCGTGATATGACTAGCGCGTCTCGTATCACAAAACGGGATCCGTGCATCCGAGATACAATGATGGAAGAGAAAGAGAAATTAGATAGTTACAAAGTTGGATCTTTGCCTACTGTAATATATATACCTGATTTCATCACAGATAGTGAACAAAGCTTTCTTCTTAACAATATATATGGAGCCCCTGCATCAAAGTGGAAGTTGTTGAAGAATAGGAGGTTACAGAATTGGGGTGGCGTTGTCCATGAGAAGGGCCTTCTACCTCAACCATTGCCTCCATGGTTAACAAATCTTACACAAAAGATATCAGAAGAATCAGAACTATTTCCATCAGCAATCAATCATGTTCTCATCAATGAGTACTTACCTAACCAAGGCATAATGCCACATCAAGATGGTCCAGCTTACTTCCCAGTTGTAGCTATTCTTTCACTTGGATCGCCTGTCGTCATGGACTTTACACCTCATGCTAGATTTAAACTAGATCCGCAAGATGTTAATGGCAACGATTCTGATGGAGAAGATAAAAGGCTTGATGATAATTACCTCCCATTCTCTGTTCTATTGATGCCTCGCAGTCTACTGATATTCAAGGATAAGGCATACTCAGATTATTTGCATGGTATTAAAGATTGTGTGGTACAATGCTATGATGGGGCTGTAAATGAAATGGAAGCTTTGAAACACAATGAATCAGATAGACCCTATTTTGGCTCAGAGGAATCAGTGGAAACAATGGGGAAGGAAGAGAGAGCCTCTATTGAGAATCAATCTGAGATTGGGAGCTATCACATTGAAATATCTAGTCCTTCATCAGATTTCATGCATACGATGAAAAAGAATTCTGACCTGAGTGAGATTGGATCTGTATTCAACAACTTGGCTAAGCAGCTTGAGGAACCTGTTGACTTTGAGCTTCCAGATTCGTTTACCAAGAATAAACCTGTGCAGTATAGATCCATAAAGCGCAATATATATACTTCAAAGAAGTTTAAGAGACGGTTTGATGATGGCATATTCTGTTCTTGTACTCCTTCACCTGAATCTCCGAATGTGTGTGGTATTGATTGCCACTGTGGGGTGCTTTTATCTTGCTGTTCTTCAGCCTGTAAATGTGGGAGCTCCTGTCTCAACAAACCATTTCAGCATCGTCGGGTGAAAAAGATGAAATTAGTTCAGACTGAGAAATGTGGCTCTGGTATTGTAGCTGCTGAAGATATTAAGCGTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTAATTGATGACAAAACATGTGAAGAAAGACTTTGGAACATGAAGTATCGTGGGGATTCAAACTTTTACTTATGTGAAATCAATCGAGATACTGTGATTGATGCCACATATAAGGGAAACAAATCTAGATATATCAATCATAGTTGCTGTCCCAATACCGAGATGCAGAAATGGTTGGCTATGAATTGTTTTGTTAGTGTTAGGATAGCAGATGGTGAAACCAGAATAGCCATTTTTGCTACACGAGACATTCAAAAGGGTGAACAACTCACCTACGATTACCGGTTTGTCCAATTTGGCGCAGACCAAGACTGTCACTGCGGTGCTGTTGCCTGCAGGCGTAAGCTGGGTGTCCAACCTACAAAGCCTAAAATGTCAGTTAAATGTCAGCCAACTCCACTTGGTGGAATAAGATCTAGTTCTTGTATATATTTTTTCTGTCTAAAGGTATGCCCTAACGTTTGTCGCTTAGGACGAATGGCTGTGTTGAAATTTGAGATGTCTAAAGAAATTGAATCAACTTACTAG 1815 0.4 MVCELCEERCNRDMTSASRITKRDPCIRDTMMEEKEKLDSYKVGSLPTVIYIPDFITDSEQSFLLNNIYGAPASKWKLLKNRRLQNWGGVVHEKGLLPQPLPPWLTNLTQKISEESELFPSAINHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHARFKLDPQDVNGNDSDGEDKRLDDNYLPFSVLLMPRSLLIFKDKAYSDYLHGIKDCVVQCYDGAVNEMEALKHNESDRPYFGSEESVETMGKEERASIENQSEIGSYHIEISSPSSDFMHTMKKNSDLSEIGSVFNNLAKQLEEPVDFELPDSFTKNKPVQYRSIKRNIYTSKKFKRRFDDGIFCSCTPSPESPNVCGIDCHCGVLLSCCSSACKCGSSCLNKPFQHRRVKKMKLVQTEKCGSGIVAAEDIKRGEFVIEYVGEVIDDKTCEERLWNMKYRGDSNFYLCEINRDTVIDATYKGNKSRYINHSCCPNTEMQKWLAMNCFVSVRIADGETRIAIFATRDIQKGEQLTYDYRFVQFGADQDCHCGAVACRRKLGVQPTKPKMSVKCQPTPLGGIRSSSCIYFFCLKVCPNVCRLGRMAVLKFEMSKEIESTY* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3269 604 Gene3D SET domain 304 559 IPR046341 -
Amo05g3269 604 SUPERFAMILY Clavaminate synthase-like 47 224 - -
Amo05g3269 604 SMART PostSET_3 530 546 IPR003616 -
Amo05g3269 604 SMART set_7 397 530 IPR001214 GO:0005515
Amo05g3269 604 ProSiteProfiles SET domain profile. 397 524 IPR001214 GO:0005515
Amo05g3269 604 Pfam SET domain 408 523 IPR001214 GO:0005515
Amo05g3269 604 CDD SET_ASHR3-like 398 546 - -
Amo05g3269 604 Gene3D - 39 264 IPR037151 -
Amo05g3269 604 ProSiteProfiles AWS domain profile. 346 395 IPR006560 GO:0005634|GO:0018024
Amo05g3269 604 Pfam 2OG-Fe(II) oxygenase superfamily 86 220 IPR027450 -
Amo05g3269 604 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 292 582 IPR025787 -
Amo05g3269 604 ProSiteProfiles Post-SET domain profile. 530 546 IPR003616 -
Amo05g3269 604 SMART shorttest3 346 396 IPR006560 GO:0005634|GO:0018024
Amo05g3269 604 SUPERFAMILY SET domain 310 536 IPR046341 -
Amo05g3269 604 PANTHER SET DOMAIN PROTEINS 285 555 - -
Amo05g3269 604 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 285 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3269 Amo-Chr5 94835149 94850726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3269 376 542 C2H2 Transcription Factor Family AT2G23740 34.426 9.99e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo05g3269 2OG-FeII_Oxy_2 5.1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3269 - - ahf:112751595 1061.6