Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3180 ATGGAAAAAGAAGATATTTTTGGTTCCGGGCATGCGGTCAAGGCTGATGAGGCTCCAGGGGGCTTCCACGTGGCACCAAGAAGTGAAAATATACAGTTTTCTGCACCCACGGCGGAGCCACCGCAGCAGCCGGTGGTTCCGYCCACGGCTATGGTGGCAGTAACACCGGCGACAGGGACGGATGGGAAGAAGAAGAGGGGGAGGCCTAGAAAGTATGGACCGGACGGCAAGTTGACGCCGGAGGCAGCAGCGAAGGCGTTGTCTCCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCATATAAATTTTTTGAGTTTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCTCACATTCTTACAGTAAATGCTGGAGAGGATGTTACTATGAAGATTATGTCCTTTTCTCAGGACGGATCCCGTGCCATATGCATTCTCTCTGCCAATGGCACGATTTCAAATGTCACGCTTCGTCAACCAACTTCTTCCGGCGGCACTTTAACATATGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGCTCATATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTTTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGAGGAGGACTTGCCGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGTTAGAACATAAACAAAAGAAGCAAAGGGTGGAACATCATATATCATCAACTATATCTGCTCCACTTAATGTTCCTACTATTTCTGCTGAAGAAATGAAGATAAGTCTTGGTGGAGTGAAGCCTTTCATGACACCCCCTTCGGTTCCTTTTCAAGTCGAAAACATTCCTCCTCCTCCTCCTGCGTTTGTCAACGGCCAATGTTCTCTGAACTCATCTGGTGACGACGATGATGAAGAAGATGCCTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTTGCATGCTAA 1092 0.4844 MEKEDIFGSGHAVKADEAPGGFHVAPRSENIQFSAPTAEPPQQPVVPXTAMVAVTPATGTDGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEFENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEHKQKKQRVEHHISSTISAPLNVPTISAEEMKISLGGVKPFMTPPSVPFQVENIPPPPPAFVNGQCSLNSSGDDDDEEDASLHEKESNPSLSDPAGVAC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3180 363 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Amo05g3180 363 MobiDBLite consensus disorder prediction 1 78 - -
Amo05g3180 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 261 - -
Amo05g3180 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 322 IPR039605 GO:0003680
Amo05g3180 363 MobiDBLite consensus disorder prediction 311 363 - -
Amo05g3180 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 322 - -
Amo05g3180 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Amo05g3180 363 Gene3D - 145 279 - -
Amo05g3180 363 CDD DUF296 144 258 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3180 Amo-Chr5 93328801 93333064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3180 53 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.274 6.82e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3180 - - adu:107489679 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3180 05 93328801 93333064 Amo19g2376 19 109264679 109271150 PCT
Amo19g2376 19 109264679 109271150 Amo05g3180 05 93328801 93333064 PCT