Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3170 ATGGGGTGTTCAGTTCCTTCATTACTTCTTCATCTCTTCTCTCTCGTAATGTTTTTGGTTTTCAACCCACCATGTGTTTGTGGAAATGTCGAAGATGATGAGCTTAAATCACTGTTGGACTTGAAGGCTGCTTTGGATCCGGACAACACCTATCTCTCATCTTGGACCATGAATGGCAACCCTTGTGGTGGTGGTTCCTTTGAAGGTATTGCTTGCAATGATCAAGGTCAAGTTGCAAATATTTCTCTGCAAGGGAAAGGTCTCTCTGGGAAGCTTTCATCTTCCATTGCTGGACTTAAGCACCTTACAGGACTCTACTTGCATTATAACTCATTATCTGGCGACATACCTAAGGAGATTGCAAACTTGACTCAGCTCAGTGATTTGTATCTGAATGTTAATCATCTTTCTGGGGAAATCCCTTCTGAGATCGGCAAGATGGAGAACCTCCAAGTTTTGCAGCTTTGTTACAATCAGTTGACAGGAAGCATACCTACACAGCTTGGTGATTTGAAAAAGCTTAGTGTTCTTGCTTTGCAATCGAACWAGTTAACYGGTGCAATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGACTAGATTTGAGCTCTAATAAGCTCTTTGGTTCCATTCCCTCTAGACTAGCTGATGTTACTTCACTGCAAGTTCTGGATGTTCACAACAATACGCTCTCTGGGAATGTACCTCCTGCTCTTAAGAGACTGGAATATGGATTTGTGTATGAATCAAATGCGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAGAGCTTGCAATGATTCGGATCATGTCAACCCCAATAGACCTGAACCCTATGGGGCAGGAGTTAATGGTCTATCTAGAGATATCCCAGAAACTGCAAATGTAAAGTTGCCTTGCAATGGAACTCGGTGCCAAAGTTCATCAAAATCCAAGCACACATCTGTTACGGTTGGCATAGTTCTGGTTATGATTGCAGTATCAGCAATTGGACTTCTGACCTTTACATTGTACCGTCGACGGAAACAAAAGCTTGGAAATGCTTTTGATATCTCCGAGAGCCGCCTAAGTACTGATCAAACCAAGGGTATATATAGGAAAAACGGTTCTCCTCTAGTGAGCCTTGAGTATGCCAATGGATGGGACCCTTTAGCTGATAGCAGGAATTTCAATGGAGATAGCCAAGATATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTAGAGTCGGCAACTCAGTATTTCTCAGATATGAATTTGTTAGGTAAGAGCAACTTCAGTGCAACATATAAAGGAGTTTTGAGAGACGGGTCTGTTGTTGCTGTTAAGAGCATCAGTAAAACTAGCTGCAAATCAGATGAAGCTGAATTTTTGAAGGGCCTGAACACTTTGACCTCACTGAGGAATGAGAATTTAGTGAGGTTGAGAGGATTTTGCTGTTCAAGGGGACGAGGTGAATGCTTCCTTGTCTATGATTTTGTGCCTAATGGAAATCTGACGCGCTACCTAGATGTGAAGGAGGGTAACGGAGAAATCCTGGAATGGTCAACTAGAGTTTCTATTGTGAAAGGCATTGCCAAAGGTATAGCATATCTACATGCATACAAGGCAAACAAACCGGCTCTTGTTCACCAAAACATCTCTGCGGAGAAAGTACTRGTCGATCAGCGATACAACCCGCTGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACTAATGACATRGTTTTCTCTGCATTAAAGGCCAGTGCTGCCAAGGGTTATTTGGCTCCTGAGTACACAACTACAGGCAAATTRACAGAGAAAAGCGATGTGTATGCTTTCGGGGTGCTTCTTTTCCAGATCCTCACAGGGAAGCAGAAGATAACTTGCTCGTTACGCCTTGCCGTGGAATCCTTCAAGTTCGAAGAATTCATCGACCCGAATRTGCATGGCAGATTCTTTGAATACGAGGCTGCTAAACTCGCAAAGATGGCTTTGCTTTGCTCCCACGAGTCTCCCTTCGAGAGGCCAACAATGGAAGCCATTGTTCAAGAACTCAGCAACTGTAGTAGCTGTCTCTGA 2067 0.434 MGCSVPSLLLHLFSLVMFLVFNPPCVCGNVEDDELKSLLDLKAALDPDNTYLSSWTMNGNPCGGGSFEGIACNDQGQVANISLQGKGLSGKLSSSIAGLKHLTGLYLHYNSLSGDIPKEIANLTQLSDLYLNVNHLSGEIPSEIGKMENLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNXLTGAIPASLGDLGMLMRLDLSSNKLFGSIPSRLADVTSLQVLDVHNNTLSGNVPPALKRLEYGFVYESNAGLCGVGFSSLRACNDSDHVNPNRPEPYGAGVNGLSRDIPETANVKLPCNGTRCQSSSKSKHTSVTVGIVLVMIAVSAIGLLTFTLYRRRKQKLGNAFDISESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDSQDMFQSFRFNLEEVESATQYFSDMNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNTLTSLRNENLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGNGEILEWSTRVSIVKGIAKGIAYLHAYKANKPALVHQNISAEKVLVDQRYNPLLSDSGLYKLLTNDXVFSALKASAAKGYLAPEYTTTGKLTEKSDVYAFGVLLFQILTGKQKITCSLRLAVESFKFEEFIDPNXHGRFFEYEAAKLAKMALLCSHESPFERPTMEAIVQELSNCSSCL* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3170 688 Gene3D Ribonuclease Inhibitor 182 253 IPR032675 -
Amo05g3170 688 Gene3D Transferase(Phosphotransferase) domain 1 495 687 - -
Amo05g3170 688 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Amo05g3170 688 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 686 - -
Amo05g3170 688 SMART serkin_6 416 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3170 688 SUPERFAMILY L domain-like 34 242 - -
Amo05g3170 688 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Amo05g3170 688 Gene3D Phosphorylase Kinase; domain 1 386 494 - -
Amo05g3170 688 Pfam Protein tyrosine and serine/threonine kinase 420 681 IPR001245 GO:0004672|GO:0006468
Amo05g3170 688 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 686 - -
Amo05g3170 688 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Amo05g3170 688 CDD TM_EGFR-like 312 345 - -
Amo05g3170 688 ProSiteProfiles Protein kinase domain profile. 416 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3170 688 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3170 Amo-Chr5 93171927 93175881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3170 7 529 Miscellaneous Gene Families AT4G22730 55.056 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Amo05g3170 PK_Tyr_Ser-Thr 2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3170 - - gmx:100789253 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3170 05 93171927 93175881 Amo19g2365 19 108351277 108354439 PCT
Amo05g3170 05 93171927 93175881 Amo09g1953 09 82139520 82142361 PCT
Amo19g2365 19 108351277 108354439 Amo05g3170 05 93171927 93175881 PCT
Amo09g1953 09 82139520 82142361 Amo05g3170 05 93171927 93175881 PCT