LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g3159	ATGGAGTGCAATAAGGACGAGGCAAACAGAGCTAAAGAAATTGCAGAGAGGAAGTTTAATGCAAAGGATACTTTGGGTGCAAAGAAATTTGCTTTGAAAGCTCAAAATTTGTTTCCAGATCTTGAGGGCATTCCTCAGATGTTAGCAACACTTGATGTGTATATTTCTGCCGAGCGTAAAATAAATGGAGAAGCAGATTGGTATGGTGTACTCGGTGTTGACCCATTTGCCGATGATGATACAGTTAGGAAACAGTACAGGAAGCTAGCTCTTATGCTTCACCCTGACAAAAACAAGTCCGTTGGTGCAGATGGGGCCTTTAAACTTATTTCAGAGGCGTGGAGTTTACTATCAGATAAGTCTAGAAGGGCAGCATATGATGAGAAGAGAAAAACAAAAGCCGGGAAAGTTTCATCGAAGTTTGGAGGTTCATCAGCAGCAACAGGGGCTAATGGCAGTTACAATTTTGCTAAGACTGCCCCTTCAAGTGCAAGGACTCAGAAGAATACTGCGAAAGAACACTCCTCATCTTCTACCCATAAGCCAAAAGGAAATACATTTTGGACTGTTTGCCACAGATGCAAAATGCAGTATGAGTATCTACGAGTCTATCTTAACCTTAAACTCTTGTGTCCCAATTGCCATGAGGCATTTTTGGCTGTAGAAACTGCTCCTCCACCTTCAAGCGGTATTAGACCTGCAGCTTCATGGGACTTTTCACATCAGAAGAATCGTCAAGGACCTAATAAAAGCAAATCTCATACTGGAAAGAACATGGCAGCTCCAAACGTCGGGGCGGGGAAAAACCATAGCAATGCTGATTTCCAGTGGGCTCCATTCTCAAAAACATCTGGTGTTTCTAATGTTGCTCAAGCTGCAAGTGTTGTTCAGCAGGCCTATGATAAGGTGAAGCGAGAACGTGAGGAGGCACAAGCAGCTACCAAAAGGGAAGAGGCCTTAAGAAGGAAGCAGCATGGTTCTAAAAAGGGTTACTTCAATTCTGGTAAGAGAAAAAGGGGGGGCATGGAGGATGTCAATGGTAAGGAACCTGTAAATCGAATGGGAGTGGGAAATGGAGCAGTAGGAGCATATGCAAGAGATTTTTCCCCAGCAGAACTGCAGGATATTCTTATGGATAAAGCTAGAAAAGAAATTAGCGATAAACTCAGGGAAATTCGGTCAAATACTTTTGATAGTTTAGCTAAAGGGTGTGAGGATGGCTTCAAGAAAGCAAATGAGCAAGGTGAAAAATTTTTTAGGTAA	1263	0.426	MECNKDEANRAKEIAERKFNAKDTLGAKKFALKAQNLFPDLEGIPQMLATLDVYISAERKINGEADWYGVLGVDPFADDDTVRKQYRKLALMLHPDKNKSVGADGAFKLISEAWSLLSDKSRRAAYDEKRKTKAGKVSSKFGGSSAATGANGSYNFAKTAPSSARTQKNTAKEHSSSSTHKPKGNTFWTVCHRCKMQYEYLRVYLNLKLLCPNCHEAFLAVETAPPPSSGIRPAASWDFSHQKNRQGPNKSKSHTGKNMAAPNVGAGKNHSNADFQWAPFSKTSGVSNVAQAASVVQQAYDKVKREREEAQAATKREEALRRKQHGSKKGYFNSGKRKRGGMEDVNGKEPVNRMGVGNGAVGAYARDFSPAELQDILMDKARKEISDKLREIRSNTFDSLAKGCEDGFKKANEQGEKFFR*	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g3159	420	PRINTS	DnaJ domain signature	68	86	IPR001623	-
	Amo05g3159	420	PRINTS	DnaJ domain signature	102	122	IPR001623	-
	Amo05g3159	420	PRINTS	DnaJ domain signature	86	101	IPR001623	-
	Amo05g3159	420	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	152	173	-	-
	Amo05g3159	420	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Amo05g3159	420	Pfam	DnaJ domain	66	127	IPR001623	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	308	325	-	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	239	258	-	-
	Amo05g3159	420	Gene3D	DnaJ domain	63	184	IPR036869	-
	Amo05g3159	420	SMART	dnaj_3	65	122	IPR001623	-
	Amo05g3159	420	CDD	DnaJ	66	119	IPR001623	-
	Amo05g3159	420	Coils	Coil	293	323	-	-
	Amo05g3159	420	SUPERFAMILY	Chaperone J-domain	59	126	IPR036869	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	308	351	-	-
	Amo05g3159	420	PANTHER	BNAC03G44070D PROTEIN	1	403	-	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	226	258	-	-
	Amo05g3159	420	MobiDBLite	consensus disorder prediction	152	182	-	-
	Amo05g3159	420	PANTHER	BNAA04G14940D PROTEIN	1	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g3159	Amo-Chr5	93086691	93090896	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g3159	4	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	34.468	2.22e-34	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g3159	-		-	ahf:112751648	825.469