Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3145 ATGGAAAAAGAAGATATTTTTGGTTCCGGGCATGCGGTCAAGGCTGATGAGGCTCCAGGGGGCTTCCACGTGGCACCAAGAAGTGAAAATATACAGTTTTCTGCACCCACGGCGGAGCCACCGCAGCAGCCGGTGGTTCCGACCACGGCTATGGTGGCAGTAACACCGGCGACAGGGACGGATGGGAAGAAGAAGAGGGGGAGGCCTAGAAAGTATGGACCGGACGGCAAGTTGACGCCGGAGGCAGCAGCGAAGGCGTTGTCTCCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCATATAAATTTTTTGAGTTTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCTCACATTCTTACAGTAAATGCTGGAGAGGATGTTACTATGAAGATTATGTCCTTTTCTCAGGACGGATCCCGCGCCATATGCATTCTCTCTGCCAATGGCACGATTTCAAATGTCACGCTCCGTCAACCAACTTCTTCCGGCGGCACTTTAACATATGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGCTCATATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTTTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGAGGAGGACTTGCCGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGTTAGAACATAAACAAAAGAAGCAAAGGGTGGAACATCATATATCATCAACTATATCTGCTCCACTTAATGTTCCTACTATTTCTGCTGAAGAAATGAAGATAAGTCTTGGTGGAGTGAAGCCTTTCATGACACCCCCTTCGGTTCCTTTTCAAGTCGAAAACATTCCTCCTCCTCCTCCTGCGTTTGTCAACGGCCAATGTTCTCTGAACTCATCTGGTGACGACGATGATGAAGAAGATGCCTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTTGCATGCTAA 1092 0.4863 MEKEDIFGSGHAVKADEAPGGFHVAPRSENIQFSAPTAEPPQQPVVPTTAMVAVTPATGTDGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEFENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEHKQKKQRVEHHISSTISAPLNVPTISAEEMKISLGGVKPFMTPPSVPFQVENIPPPPPAFVNGQCSLNSSGDDDDEEDASLHEKESNPSLSDPAGVAC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3145 363 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Amo05g3145 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 261 - -
Amo05g3145 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Amo05g3145 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 322 IPR039605 GO:0003680
Amo05g3145 363 MobiDBLite consensus disorder prediction 313 363 - -
Amo05g3145 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 322 - -
Amo05g3145 363 MobiDBLite consensus disorder prediction 1 77 - -
Amo05g3145 363 CDD DUF296 144 258 IPR005175 -
Amo05g3145 363 Gene3D - 145 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3145 Amo-Chr5 92924414 92928707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3145 53 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.274 7.44e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3145 - - adu:107489679 678.322