Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3115 ATGTCTCAGCCAATCCCAACTCAGGAATTGGTCGCCAAGGATCTTCATGGTTACGAATGGGGCTTTAAGCATATAGTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCTGGAGACCCCTTTGTAGGACACAACGGAGAGTTACGTGTTGAACTGAGGCGTAGTACTCCTCAGCCAAGCAGCATGCCTTCATCTGTGATTTCCAGTCAAAGCATGCATCTTGGAGTACTCGCAACTGCATATCATGATGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGTCAAGGTAG 333 0.4565 MSQPIPTQELVAKDLHGYEWGFKHIVRGQPRRHLITTGWSTFVASKRLVAGDPFVGHNGELRVELRRSTPQPSSMPSSVISSQSMHLGVLATAYHDVATQTLFVVYYKSR* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3115 110 Gene3D - 1 69 IPR015300 -
Amo05g3115 110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 110 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo05g3115 110 PANTHER AUXIN RESPONSE FACTOR 9 1 110 - -
Amo05g3115 110 CDD B3_DNA 4 67 IPR003340 GO:0003677
Amo05g3115 110 Pfam B3 DNA binding domain 7 67 IPR003340 GO:0003677
Amo05g3115 110 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Amo05g3115 110 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3115 Amo-Chr5 92387618 92388128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3115 1 110 B3 DNA Binding Superfamily AT2G46530 73.451 1.69e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo05g3115 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3115 K14486 - gmx:100779003 177.563