Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3095 ATGAAGGATGCACAAGCTAGCGCTGAGGTGCTAGGATATTACCGATGCAGCAGCTCAAAAGGGTGCCCGGCGAGGAAGCAAGTTGAACGAAGCCGTGTGTATCCCACAAAGCTCATCGTCACCTACAACTACGAACACAACCACTCTCTTCCGTCCGCCGCTGGCTTCCCGCCGGAGGATCTGACGGTATTCTCGAGCCACGTCGATCTCGACCTCTCCGGCGACTCCGCAGTACTTCTCAGCCACCACAACCACCACGGATTCGGGTGGTTCGACGACGTGGCCTCAGCCGGCGGCGTCCTGGAGAGTCCGATCTGCGGCGGCGTTGATGACATGGCGCTGACGGCGGAGGAAGAGGACGGGGAAGAGTCGCTTTTCGCCGGCCTCGGCGAGCTGCCGGAGTGCTCGGCTGTTTTCCGGCGAAGGAATATTCCAAGCGCCAGCGCGATCCAGTGCGGTGGCATCACAGGATAA 474 0.6055 MKDAQASAEVLGYYRCSSSKGCPARKQVERSRVYPTKLIVTYNYEHNHSLPSAAGFPPEDLTVFSSHVDLDLSGDSAVLLSHHNHHGFGWFDDVASAGGVLESPICGGVDDMALTAEEEDGEESLFAGLGELPECSAVFRRRNIPSASAIQCGGITG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3095 157 Pfam WRKY DNA -binding domain 3 48 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g3095 157 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 79 152 IPR044810 GO:0003700
Amo05g3095 157 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 52 IPR044810 GO:0003700
Amo05g3095 157 Gene3D WRKY domain 1 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo05g3095 157 PANTHER OS01G0750100 PROTEIN 79 152 - -
Amo05g3095 157 PANTHER OS01G0750100 PROTEIN 12 52 - -
Amo05g3095 157 ProSiteProfiles WRKY domain profile. 1 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g3095 157 SMART WRKY_cls 2 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g3095 157 SUPERFAMILY WRKY DNA-binding domain 11 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3095 Amo-Chr5 91857944 91859497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3095 2 143 WRKY Transcription Factor Family AT1G29280 37.576 2.59e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo05g3095 WRKY 2e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3095 - - ahf:112707218 288.885