Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3052 ATGGAGGAAAGGAATATTGAGATGGAGAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTTCACCCAACAGATGAAGAGATTGTTGGTTTTTATCTAAAAAGAAAAATTCAGCAAAAATCTCTTCCTATTGAATTGATCAAGCAAGTTGATATCTATAAGTATGAGCCATGGGACCTTCCAAGGGTGGCAAGTAATGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGGAAATACAGAAACAGTGCAAGGCCCAACAGAGTGACAAGATGTGGGTTTTGGAAGGCCACTGGAACMGACAGGCCCATWTACTCATCTGAGGCCCAATCCATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGCAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCACTTTCTTCTGATTCAGCCAAGAAATGCTCTGACAAAACTACCCCTGCTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCCATGGCGCAAAAAGCCTCATTACCTCATCATCCTTATAATTGGAATCATCATAATCAATTATTTGATGATATACTCACACATCAACAACACCAACACCAACACCCTATTATTCCAAACTCCAACAACAACTTCATCTTCTACAATTCCAATTCTACCCTTGAACCCACAAAAGAAATTGATGCCACTACTACTAGTAGCTCCATTGTTATTTCTTCCAACATAGGCCTTCATGAAGATCCAAATCATCATCATTACAATAATAATAGTAGTGGGTTCTCATATGATGATGATTCAGGTGTAATTACAACAATTGCTGGGTTCCCATTCAATTTGCCTCCAAATGATGATGATGCTGCTGCTTGGAATAATAATAATAATAAGCCTAATACTACTCTGCCATGGGATTACTCATCAGACATGTCCACTACCTATTCCACTAATAAATCTTACACTTAA 990 0.3808 MEERNIEMENKIEDEMMPGFRFHPTDEEIVGFYLKRKIQQKSLPIELIKQVDIYKYEPWDLPRVASNGEKEWYFYCPRDRKYRNSARPNRVTRCGFWKATGTDRPIYSSEAQSIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSDSAKKCSDKTTPASDSWAICRIFKKTNTMSMAQKASLPHHPYNWNHHNQLFDDILTHQQHQHQHPIIPNSNNNFIFYNSNSTLEPTKEIDATTTSSSIVISSNIGLHEDPNHHHYNNNSSGFSYDDDSGVITTIAGFPFNLPPNDDDAAAWNNNNNKPNTTLPWDYSSDMSTTYSTNKSYT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3052 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 212 - -
Amo05g3052 329 SUPERFAMILY NAC domain 12 173 IPR036093 GO:0003677|GO:0006355
Amo05g3052 329 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Amo05g3052 329 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Amo05g3052 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 212 - -
Amo05g3052 329 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3052 Amo-Chr5 89696049 89698758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3052 2 178 NAC Transcription Factor Family AT5G39820 67.016 2.21e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g3052 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3052 - - aip:107621433 528.48