Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3044 ATGGAGAATGATGGCAAAGAGTCGTATAAGGATGGTGATCAATTTGAGGATTTAAGTGTTGAGTATGAGTGCAGTTCCGATGAAAGTGATGATATGGTGGATGTAACTGTAGATGAAGCAGAGGCAGATATAATTAATGCTGGTGGTTTGGAAAAGTTGATAACTGATTTGACCATCGAAGACATATTGGGACTGGCGTTTGATACAGAATCTCAAGTTTGTGAATTTTATGCCAAATATGCCAAGTGCTATGGATTTGTGTCCCGAAAAGACTTGAAGACGGTGGATGCTAATGGCAACATTAATACAAGACAGTTGGTTTGCAATAAAGCAGGAGAAAGACATTGGAAGCACATTAAAAGGGACAATCGGCAAAGGAAGCATAGGGCAATTACTCGTGTCAACTGCAAGGCGAGGATTCGGTTCATTCGTCACTATAGAACGGGTAAGTGGAAAGTCAGTGTCTTTGAGAGTGAACACAATCATCCACTGTGTCCACCTAAGTACAGACATCTTATTGCCGCGAATCGTGGGCTTGATGAGGCCGATAAAATACAAGCAGACAGCTTGCGAGCATGTGATGTTAAAACTTGCCACATAATGGTACTAAGGCATTACCGAAACAACCATCTTACTGCTGACTTTGATACCTTTTATAAGTTTCCTGTTTTGACTACGTGCTTGGAAAGTTTTGAGAAACAAGCTGCTGAACTTTATACTAGAAATATTTACAAACTTGTGAAAGATGAGATAGAAGCAGCAGGTGCTTTAAATGTGACTGAATGCCCAAATAGTGGAGACATTGTTGAGTACAGCACGAGTGAGTATTTTAATCATCAATGGGAATTTAAAGTGTCTTACAATAAAGACAAGGACCTGTTTGCGTGTGAGTGCAGGCTATTTGAGACTCATGGACTACCGTGCTCCCACATCTTTGGGGTCTTGAAGCATCGCAATGCAAAATGCGTCCCTACATCTCTTATCCTGAAAAGATGGACAAGAGATGCAAAGAACACCGCTGATGATATAGCGCCCACACTTAGACGCGGTGCAATGGCATCTATTTTTTGGAAGCTTTGTGATATTTCTTCCAAAAATTCAGCAGACTATAGGGAAATTTCAGGTGAGTTACTTAAGCTAATTTCGAAGGTGCAAAATAAAGGTGATGCAAAAGCGAGGCTTTCCCCCACTTCAGCGCTAATAGGTGATCCAGCTGTTGTGAAGTCAAAAGGGGCTCCAAGAAAGGTTCCAAAAGGCCAAAAGAGGCGAAGATGTTCGCATTGTAAGTCAGGCAGGCATTTCGTTAGGACATGTCCATTACTCGCCAAGGAGGACTCCCCCGCCGAATACTCAAATGCTGAAGATGAACCAATGGTTGAAGAATGTGATGCCAATAAACAGACTCCCTCTCAGAACACAAAATCAGTAGAAAATACACCCGTGCACAATAAAAATAATTTTAAATGCTTATATTATTTCTTATTATTCTGTTACAAAAAATTCAAGGGTTGTGGAAGCAAGAAGTCTGTATCTAAATTGACAGAGGCACCGAAGATTAGAGCAAATGGCAAAAAAAGTCGATAG 1584 0.4085 MENDGKESYKDGDQFEDLSVEYECSSDESDDMVDVTVDEAEADIINAGGLEKLITDLTIEDILGLAFDTESQVCEFYAKYAKCYGFVSRKDLKTVDANGNINTRQLVCNKAGERHWKHIKRDNRQRKHRAITRVNCKARIRFIRHYRTGKWKVSVFESEHNHPLCPPKYRHLIAANRGLDEADKIQADSLRACDVKTCHIMVLRHYRNNHLTADFDTFYKFPVLTTCLESFEKQAAELYTRNIYKLVKDEIEAAGALNVTECPNSGDIVEYSTSEYFNHQWEFKVSYNKDKDLFACECRLFETHGLPCSHIFGVLKHRNAKCVPTSLILKRWTRDAKNTADDIAPTLRRGAMASIFWKLCDISSKNSADYREISGELLKLISKVQNKGDAKARLSPTSALIGDPAVVKSKGAPRKVPKGQKRRRCSHCKSGRHFVRTCPLLAKEDSPAEYSNAEDEPMVEECDANKQTPSQNTKSVENTPVHNKNNFKCLYYFLLFCYKKFKGCGSKKSVSKLTEAPKIRANGKKSR* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3044 527 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Amo05g3044 527 SMART 26again6 294 321 IPR006564 GO:0008270
Amo05g3044 527 MobiDBLite consensus disorder prediction 464 479 - -
Amo05g3044 527 ProSiteProfiles Zinc finger SWIM-type profile. 283 319 IPR007527 GO:0008270
Amo05g3044 527 MobiDBLite consensus disorder prediction 449 479 - -
Amo05g3044 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 188 IPR031052 GO:0006355
Amo05g3044 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 202 388 IPR031052 GO:0006355
Amo05g3044 527 PANTHER OS03G0181600 PROTEIN 202 388 - -
Amo05g3044 527 PANTHER OS03G0181600 PROTEIN 63 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3044 Amo-Chr5 89612391 89615042 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g3044 FAR1 1.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3044 - - ahf:112778948 538.495