Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2992 ATGTCATCTCTGACGCACATAGACAATTATTGCAACTCTCACTTCATTAATAACAAGTCTTCCACTGACTTCGCTTACAAAGTCTTCTTCAATTCCTGGCAACACAGACTACTCTTTGCTTGCTTTAATGCTGTAAAAGTAATTGGTGGCTTGGACTGGAACTTCATCAGTACACAGGTTTTACTAGTAAACATGGCTAACTTGGAAATAGAAGAGGAGCCAATGCTATCATCAAATGCACAATCATCCCATGAACTCAAGTATTCTAGTTTCCGGAGGATCCTATCAAGGAGACGAAGCGCATCCATGTACATTCCCATGGTGTCTATGGAGCCATATTACAACAGAGAACCAAGTCTTGGAGAGCATAGTCGTCGTCAACTTAACAGCGTTAGAACCTTCCCGCCCAAGATTGATGAACTATATGCCACCCTTGGAACCCAAAATATTTTCAAACAGAGTGGAGTTACTGTGACTGAAAACAGTGAAAACAACTGGGACGACAACTATGATTGGGAACACACACCACCCGCAGTGAGCGTTGGGCAACAGGGATTGATTTGTAATAATTATTTTTGTATTAGGGTCGGTACTCATGATAATGCTCACCAAGGAATTCCAAGAACTCCCAGTAGATTTGATCAAGAGTACCACGATGACATTCATGGTGATGAAGAGGGTTTTGTCAAAAAAGTGTTATCATTCATCTCTTCATGTATTCCTAAAGTTATAAGCCCACACTCAAAACGCGTCAAGCAATGGAACAAGATTATAGCTATCTTTTGCTTGGTGGCAATATTTCTCGATCCATTATTTTTCTTCATACCGTATGTACAAAAGGATTTCAATTGCATTGTTATCAACTGGACAAGGACAATACCACTTGTTGTACTTAGAAGCTTGAATGATTTAGTGTATTTCTTGAACATACTTCTTCAGTTTAGGTTGGCTTATGTTTCTGCTAGTACTGGATCAAGGGTGATTGATATAGTTGACCATCCAAAAGAGATTGCTATGCATTATTTGCATAGCTATTTTCTTCTTGATTTATTTGTAGTGATTCCGTTGCCTCAGATAATAATATTGTTTGTGCTACCAAAGTACTTGGGTTCATCAGGAGCAAATCATTCAAAGAATCTTATATCTGCAGTGATCCTTGTGCAATACATTCCCAGATTATTCAGGTTCTTGCCATTGCTAATTGGCCAATCTCCAGCAGGAATCATATTTGAGTCAGCCTGGGCAAGTTGCACTCTCAATCTTCTCATTTTTATGCTCTCTGGCCATATTGTTGGCTCTTGTTGGTATCTCTTTGGACTTCAGAGAGTTAATCAATGTTTGCTAGACGCTTGCCATAATGCTAACATCATTGGTTGCATGAAATATGTGGATTGTGGAAAAGGACATTCCTCTCACCAGACACAAGATTTGTGGACAAACAATGTAAATGCCACATCTTGTTTGAATTCGTTGTCTGGTTCTTTTGATTATGGGATCTATGCCGATGTTGTTCGACTTACTACAGGAAGCAACTTGATCAAAAAATATTTGTATGCACTTTTTTGGGGCTTCCAGCAAATCAGTACTCTTGCTGGTAATCTAACCCCAAGTGATTTTGAGTTGGAAGTCCTTTTCACAATGATAATCATAGGATTGGGGCTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTTCAAAGTCTCGGACAAAGAACACTAGAAATGCAACTTAGAAGCCGTGAAGTTGAGCAATGGATGAACCAGTTTCACTTATCAGAAGATCTAAGAAAGAGGATCAGACATGCCGAAAGGTATAATTGGGTGGCAACAATAGGGATGAATGCACAAATGCTTATGGAAAATATGCCAGAAGATCTACAGAGAGACATAAGACGTCATCTCTTCGAATTTATTAAGAAAATTCGAATTTTCAGCTTAATGGATGAGCCTATTTTAGACGCCATTTGTGAGAGGCTTAGGCAAAAAGTATACTTCAAAGGAAGTACTATTTTGCATCCTGGTGATTTGGTAGAGAAAATGTTCTTTGTTTTGCGTGGGGAATTAAAGAGCATTGGCGAAGATGGAACTAGAGTTTTTTTAACCGAAAGGGATGCTTGTGGTGAAGAACTTCTAATATGGTGTCTTGAAAATTCTTCAGTTAGCACAGATGGTAAAAAGGCATGGCTTCCTGGACCAAGATTACTTAGCAGAAGGACAGTAACGTGTTTAACGAATGTGGAGGTATATTCAATTGGAGCTGCTGACCTAGAAGCAATTACAATCCGTTTCACAAGATTCTTGCGAAATCCACCTGTTCAAAGAGCATTGAGATTTGAATCACCTTATTTGAGATCCGTTGCAGCAACACGGATTCAAGTTGCATGGAGAAAATACAGGGAAAGACAACTAAAACGTGCTCTCTCACAAGCAAATTATTATTAG 2451 0.3896 MSSLTHIDNYCNSHFINNKSSTDFAYKVFFNSWQHRLLFACFNAVKVIGGLDWNFISTQVLLVNMANLEIEEEPMLSSNAQSSHELKYSSFRRILSRRRSASMYIPMVSMEPYYNREPSLGEHSRRQLNSVRTFPPKIDELYATLGTQNIFKQSGVTVTENSENNWDDNYDWEHTPPAVSVGQQGLICNNYFCIRVGTHDNAHQGIPRTPSRFDQEYHDDIHGDEEGFVKKVLSFISSCIPKVISPHSKRVKQWNKIIAIFCLVAIFLDPLFFFIPYVQKDFNCIVINWTRTIPLVVLRSLNDLVYFLNILLQFRLAYVSASTGSRVIDIVDHPKEIAMHYLHSYFLLDLFVVIPLPQIIILFVLPKYLGSSGANHSKNLISAVILVQYIPRLFRFLPLLIGQSPAGIIFESAWASCTLNLLIFMLSGHIVGSCWYLFGLQRVNQCLLDACHNANIIGCMKYVDCGKGHSSHQTQDLWTNNVNATSCLNSLSGSFDYGIYADVVRLTTGSNLIKKYLYALFWGFQQISTLAGNLTPSDFELEVLFTMIIIGLGLLLFALLIGNIQNFLQSLGQRTLEMQLRSREVEQWMNQFHLSEDLRKRIRHAERYNWVATIGMNAQMLMENMPEDLQRDIRRHLFEFIKKIRIFSLMDEPILDAICERLRQKVYFKGSTILHPGDLVEKMFFVLRGELKSIGEDGTRVFLTERDACGEELLIWCLENSSVSTDGKKAWLPGPRLLSRRTVTCLTNVEVYSIGAADLEAITIRFTRFLRNPPVQRALRFESPYLRSVAATRIQVAWRKYRERQLKRALSQANYY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2992 816 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 72 808 - -
Amo05g2992 816 ProSiteProfiles cAMP/cGMP binding motif profile. 646 725 IPR000595 -
Amo05g2992 816 SUPERFAMILY Voltage-gated potassium channels 246 574 - -
Amo05g2992 816 CDD CAP_ED 646 779 IPR000595 -
Amo05g2992 816 Pfam Ion transport protein 254 575 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo05g2992 816 ProSiteProfiles IQ motif profile. 787 815 IPR000048 GO:0005515
Amo05g2992 816 SMART cnmp_10 646 781 IPR000595 -
Amo05g2992 816 Gene3D Jelly Rolls 644 768 IPR014710 -
Amo05g2992 816 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 808 - -
Amo05g2992 816 SUPERFAMILY cAMP-binding domain-like 573 770 IPR018490 -
Amo05g2992 816 Gene3D - 232 571 - -
Amo05g2992 816 Gene3D Helix hairpin bin 574 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2992 Amo-Chr5 86551093 86564031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2992 69 724 Ion Channels AT3G17700 49.630 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2992 K05391 - ccaj:109789004 875.93