LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g2979	ATGATTAATATTGATTTGTCCAGTTTCGCCGTTTCTTCCTCTATATCTCTCTCATATACAATTTCCAACTCCGTTAATCTTTCCCTATTATTGTCACAACAAAAAAATTCCGGCAGAAACGAAAAGAGAAGAGAAAGAAAGCGCACACAGATCGAGAAAAAGATGGCGGAAGAGCACCGATGCCAAGCTCCGGAAGGCCACAAACTCTGTGCCAATAATTGCGGCTTCTTCGGGAGCACAACCACCATGGACCTCTGCTCCAAGTGCTATAGAGATGTTCTCTTGAAGGAGCAAGAACAAGCCAAGACCAAATCCACCATCGAAACCGCTCTCTCCTCCTCCTCCACCTCAGCCCCAGCTCATCCATCTCCGCCGCCTCCAGCCGTAGATTCCCTCCCTCAACCATCACCGCTCATCGCCTTAGAATCGTCCGTATCGACGTCTCCAGCGGTTGGATCGGCGGTTCACACGAACCGATGCGCAGCATGCAGGAAACGGATCGGGTTGACCGGTTTTACATGTAGGTGCGGGATCACGTTTTGCGGGGCCCACAGGTACCCGGAGAAGCATGGGTGCGGGTTCGATTTCAAGACGGTAGGGAGGGACGAAATAGCGAGGGCGAATCCCGTGATCAAAGCCCAGAAGCTCGACAAGATTTGA	660	0.5136	MINIDLSSFAVSSSISLSYTISNSVNLSLLLSQQKNSGRNEKRRERKRTQIEKKMAEEHRCQAPEGHKLCANNCGFFGSTTTMDLCSKCYRDVLLKEQEQAKTKSTIETALSSSSTSAPAHPSPPPPAVDSLPQPSPLIALESSVSTSPAVGSAVHTNRCAACRKRIGLTGFTCRCGITFCGAHRYPEKHGCGFDFKTVGRDEIARANPVIKAQKLDKI*	220

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g2979	219	Gene3D	-	53	119	-	-
	Amo05g2979	219	SUPERFAMILY	AN1-like Zinc finger	153	214	IPR035896	-
	Amo05g2979	219	ProSiteProfiles	Zinc finger AN1-type profile.	154	200	IPR000058	GO:0008270
	Amo05g2979	219	Pfam	A20-like zinc finger	69	91	IPR002653	GO:0003677\|GO:0008270
	Amo05g2979	219	MobiDBLite	consensus disorder prediction	104	118	-	-
	Amo05g2979	219	SMART	AN1_Zf_4	160	197	IPR000058	GO:0008270
	Amo05g2979	219	Pfam	AN1-like Zinc finger	160	196	IPR000058	GO:0008270
	Amo05g2979	219	ProSiteProfiles	Zinc finger A20-type profile.	64	98	IPR002653	GO:0003677\|GO:0008270
	Amo05g2979	219	PANTHER	ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3	55	219	-	-
	Amo05g2979	219	MobiDBLite	consensus disorder prediction	119	133	-	-
	Amo05g2979	219	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	55	219	-	-
	Amo05g2979	219	SMART	A20_3	67	91	IPR002653	GO:0003677\|GO:0008270
	Amo05g2979	219	Coils	Coil	39	59	-	-
	Amo05g2979	219	MobiDBLite	consensus disorder prediction	104	136	-	-
	Amo05g2979	219	Gene3D	-	139	215	IPR035896	-
	Amo05g2979	219	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	69	114	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g2979	Amo-Chr5	85222017	85223032	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g2979	55	219	C2H2 Transcription Factor Family	AT3G52800	51.176	7.95e-50	158

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g2979	-		-	gmx:100527251	221.476