Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2961 ATGGACACCACCTCCGACGGAGACACGTCCGCGTCGTACAGAGAGAAGGCTAAGGAGAAGGAACGGGTGAGCAGGACGTCGCTGATTCACTGGCATTCGCACCATAACGACGCCGCGGCGGTTCGGAAGCTTCTAGAAGAGGATCCCTCCCTCGTGCATGCACGTGACTATGACAACCGAACGCCCCTCCACGTGGCCTCCCTCCACGGCTGGGCCGACGTTGCCAGCTGCCTCATAGAGTTTGGTGCTGACGTCAACGCCCAAGACCGATGGAGAAACACGCCCCTGGCTGATGCGGAAGGAGCAAAGAGGAATTCAGTGATTGAGCTTTTGAAGTTACGTGGAGGATTGTCTTATGTAAGTTGCATTTCCTACTTCTGCATTCTTCTTTTGGTTTGGAACCCAAAAAAAAAAGGAGGATTAAAGGAACACCATAGTTCCATAGTATTAACTTTGATGATACAGGGCCAAAATGGAAGTCATTTAGAACATAGGCCTGTTCCACCCCCATTGCCTAACAGGTGTGATTGGGAAGTTGACCCTACAGAGCTGGACTTCTCGAATTCAATTTGTATTGGAAAGGGATCTTTTGGTGAGATTTTAAGAGCTCATTGGCGTGGAACACCTGTTGCTGTCAAACGCATTCTTCCAGCTCTTTCAGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTTAATTTGCTAGTGAAACTTCGCCACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGATAGGAAGCCTCTAATGTTGATTACTGAGTATCTAAGAGGGGGTGATCTTCATAGGTACCTCAAGGTTAAAAGTTCACTTAGTACTTCAACAGCGATCAACTTTGCCATGGATATTGCCAGAGGGATGGCCTATCTTCACAGTGAACCAAATGTTATAATTCATCGAGATCTCAAGCCAAGGAATGTTCTTTTGGTCAATTCTTGTGCCGACTATTTAAAAGTAGGAGATTTTGGACTTAGCAAGCTTATTAAAGTCAAAAGTTCTCATGATGTGTACAAGATGACTGACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGACAAGAAGGTTGATGTGTTCTCCTTTGCTATGATTTTGTATGAGATGCTTGAAGGTGAACCACCATTTACAAATTTAGAACCTTATGAGGGAGCCAAGCATGTGGCTGAGGGACACAGGCCAATTATTCGAGCGAAAGGTTATGGTCCTGAACTACGAGAGTTAATAGAGCTTTGTTGGGCTGGTGACATGACTCAAAGACCTTCCTTCCTAGATATCCTTAAACGGCTTGAGAAGATCAAAGAAAAACCTTCAGAGCATCACTGGCATTTGTTCTCTTCATAA 1371 0.4515 MDTTSDGDTSASYREKAKEKERVSRTSLIHWHSHHNDAAAVRKLLEEDPSLVHARDYDNRTPLHVASLHGWADVASCLIEFGADVNAQDRWRNTPLADAEGAKRNSVIELLKLRGGLSYVSCISYFCILLLVWNPKKKGGLKEHHSSIVLTLMIQGQNGSHLEHRPVPPPLPNRCDWEVDPTELDFSNSICIGKGSFGEILRAHWRGTPVAVKRILPALSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHRYLKVKSSLSTSTAINFAMDIARGMAYLHSEPNVIIHRDLKPRNVLLVNSCADYLKVGDFGLSKLIKVKSSHDVYKMTDRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFTNLEPYEGAKHVAEGHRPIIRAKGYGPELRELIELCWAGDMTQRPSFLDILKRLEKIKEKPSEHHWHLFSS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2961 456 CDD STKc_MAP3K-like 192 439 - -
Amo05g2961 456 SMART ANK_2a 58 87 IPR002110 GO:0005515
Amo05g2961 456 SMART ANK_2a 24 54 IPR002110 GO:0005515
Amo05g2961 456 ProSitePatterns Protein kinases ATP-binding region signature. 192 213 IPR017441 GO:0005524
Amo05g2961 456 SUPERFAMILY Ankyrin repeat 28 112 IPR036770 -
Amo05g2961 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Amo05g2961 456 Gene3D Phosphorylase Kinase; domain 1 178 265 - -
Amo05g2961 456 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 155 448 - -
Amo05g2961 456 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 11 126 - -
Amo05g2961 456 SMART serkin_6 186 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g2961 456 ProSiteProfiles Ankyrin repeat profile. 58 90 IPR002110 GO:0005515
Amo05g2961 456 Gene3D - 2 120 IPR036770 -
Amo05g2961 456 PIRSF ILK 2 456 - -
Amo05g2961 456 ProSiteProfiles Protein kinase domain profile. 186 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g2961 456 Pfam Ankyrin repeats (many copies) 44 96 IPR002110 GO:0005515
Amo05g2961 456 MobiDBLite consensus disorder prediction 1 21 - -
Amo05g2961 456 Gene3D Transferase(Phosphotransferase) domain 1 266 452 - -
Amo05g2961 456 Pfam Protein tyrosine and serine/threonine kinase 192 439 IPR001245 GO:0004672|GO:0006468
Amo05g2961 456 SUPERFAMILY Protein kinase-like (PK-like) 185 439 IPR011009 -
Amo05g2961 456 ProSiteProfiles Ankyrin repeat region circular profile. 58 90 - -
Amo05g2961 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 155 448 - -
Amo05g2961 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 126 - -
Amo05g2961 456 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672|GO:0006468
Amo05g2961 456 PRINTS Tyrosine kinase catalytic domain signature 299 317 IPR001245 GO:0004672|GO:0006468
Amo05g2961 456 PRINTS Tyrosine kinase catalytic domain signature 261 274 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2961 Amo-Chr5 84221797 84242271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2961 10 456 MAP Kinase Kinase Kinase AT1G14000 73.731 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Amo05g2961 PK_Tyr_Ser-Thr 4.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2961 - - gmx:100793237 693.73